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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11421-RA through 18771 annotations produced 1 hits



Olfactory-specific-F (Pbprp3):

Annotation Number : CG11421
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011281
Gbrowse : chr3R:1797869-1800967 (-) // 100.0 //
Probeset : 1641200_at
Accessions : protein= NP_524241;, nucleotide= NM_079517;
Pathway : 0005576 // extracellular region // non-traceable author statement /// 0005576 // extracellular region // inferred from e
Interpro : 0005549 // odorant binding // inferred from electronic annotation /// 0005549 // odorant binding // not recorded /// 000
FlyMine data for FBgn0011281.
VDRC has 3 RNAi stocks for FBgn0011281 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain21 ± 14 of 4 0.10Down
Head2747 ± 1414 of 410.10Up
Eye690 ± 3444 of 4 2.52None
Thoracicoabdominal ganglion13 ± 24 of 4 0.00Down
Salivary gland19 ± 40 of 4 0.07Down
Crop10 ± 22 of 4 0.00Down
Midgut14 ± 21 of 4 0.10Down
Tubule11 ± 12 of 4 0.00Down
Hindgut14 ± 04 of 4 0.10Down
Heart10 ± 13 of 4 0.04Down
Fat body13 ± 14 of 4 0.05Down
Ovary9 ± 13 of 4 0.00Down
Testis6 ± 20 of 4 0.00Down
Male accessory glands14 ± 51 of 4 0.10Down
Virgin spermatheca13 ± 24 of 4 0.05Down
Mated spermatheca15 ± 14 of 4 0.06Down
Adult carcass21 ± 13 of 4 0.10Down
Larval CNS13 ± 34 of 4 0.05Down
Larval Salivary gland16 ± 04 of 4 0.06Down
Larval midgut18 ± 23 of 4 0.07Down
Larval tubule19 ± 13 of 4 0.10Down
Larval hindgut13 ± 24 of 4 0.05Down
Larval fat body24 ± 33 of 4 0.10Down
Larval trachea19 ± 143 of 4 0.07Down
Larval carcass7 ± 21 of 4 0.03Down
S2 cells (growing)14 ± 14 of 4 0.05Down
Whole fly273 ± 174 of 4

Looking for CG11421-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime