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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11427-RA through 18771 annotations produced 1 hits



ruby (rb):

Annotation Number : CG11427
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003210
Gbrowse : chrX:4429661-4434669 (-) // 100.0 //
Probeset : 1634289_at
Accessions : protein= NP_001162664; /// NP_525071;, nucleotide= NM_001169193; /// NM_080332;
Pathway : 0005794 // Golgi apparatus // inferred from electronic annotation /// 0008021 // synaptic vesicle // traceable author st
Interpro : 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic ann
FlyMine data for FBgn0003210.
Homophila reports that CG11427 is a close match (0) to human gene ADTB3A;AP3B1;HPS2 (NP_003655), a gene associated with Hermansky-Pudlak syndrome 2, 608233 (3).
BioGrid reports that CG11427 interacts with CG14098 CG1676 CG14870 CG15154 CG15631 CG17489 CG2009 CG3294 CG3508 CG3919 CG4454 CG4617 CG5170 CG6930 CG7945 CG8669 CG8947 CG9535 .
TRiP has 2 RNAi stocks for FBgn0003210 available for purchase.
VDRC has 2 RNAi stocks for FBgn0003210 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain201 34 of 4 1.50Up
Head195 144 of 4 1.50Up
Eye242 54 of 4 1.82Up
Thoracicoabdominal ganglion219 34 of 4 1.60Up
Salivary gland220 64 of 4 1.65Up
Crop276 124 of 4 2.10Up
Midgut89 64 of 4 0.70Down
Tubule88 34 of 4 0.70Down
Hindgut140 54 of 4 1.10None
Heart143 24 of 4 1.07None
Fat body186 184 of 4 1.40Up
Ovary212 54 of 4 1.60Up
Testis43 14 of 4 0.30Down
Male accessory glands86 84 of 4 0.60Down
Virgin spermatheca239 114 of 4 1.79Up
Mated spermatheca282 184 of 4 2.12Up
Adult carcass155 64 of 4 1.20None
Larval CNS249 164 of 4 1.87Up
Larval Salivary gland276 64 of 4 2.07Up
Larval midgut85 34 of 4 0.64Down
Larval tubule129 54 of 4 1.00None
Larval hindgut161 34 of 4 1.21None
Larval fat body209 144 of 4 1.60Up
Larval trachea242 194 of 4 1.82Up
Larval carcass243 94 of 4 1.82Up
S2 cells (growing)158 74 of 4 1.19None
Whole fly133 124 of 4

Looking for CG11427-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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