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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11440-RA through 18771 annotations produced 1 hits



CG11440 (laza):

Annotation Number : CG11440
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037163
Gbrowse : chr3L:22451915-22454283 (-) // 100.0 //
Probeset : 1635757_at
Accessions : protein= NP_649391;, nucleotide= NM_141134;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0008195 // phosphatidate phosphatase activity /
FlyMine data for FBgn0037163.
BDGP gene expression has embryonic in situ data for CG11440: 15 pix of staining in 5 body parts.
TRiP has 1 RNAi stocks for FBgn0037163 available for purchase.
VDRC has 3 RNAi stocks for FBgn0037163 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain13 ± 04 of 4 0.10Down
Head332 ± 234 of 4 3.20Up
Eye1658 ± 884 of 415.95Up
Thoracicoabdominal ganglion10 ± 13 of 4 0.10Down
Salivary gland23 ± 41 of 4 0.22Down
Crop646 ± 204 of 4 6.20Up
Midgut238 ± 114 of 4 2.30Up
Tubule73 ± 64 of 4 0.70Down
Hindgut72 ± 54 of 4 0.70Down
Heart546 ± 144 of 4 5.25Up
Fat body466 ± 364 of 4 4.48Up
Ovary37 ± 14 of 4 0.40Down
Testis14 ± 04 of 4 0.10Down
Male accessory glands783 ± 514 of 4 7.50Up
Virgin spermatheca445 ± 84 of 4 4.29Up
Mated spermatheca343 ± 74 of 4 3.30Up
Adult carcass184 ± 14 of 4 1.80Up
Larval CNS5 ± 21 of 4 0.05Down
Larval Salivary gland12 ± 13 of 4 0.12Down
Larval midgut137 ± 144 of 4 1.32None
Larval tubule112 ± 134 of 4 1.10None
Larval hindgut56 ± 44 of 4 0.54Down
Larval fat body240 ± 254 of 4 2.30Up
Larval trachea29 ± 382 of 4 0.28Down
Larval carcass10 ± 11 of 4 0.10Down
S2 cells (growing)7 ± 01 of 4 0.07Down
Whole fly104 ± 44 of 4

Looking for CG11440-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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