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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG11444-RA through 18771 annotations produced 1 hits


Annotation Number : CG11444
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029715
Gbrowse : chrX:4447144-4448378 (-) // 100.0 //
Probeset : 1627789_at
Accessions : protein= NP_572171;, nucleotide= NM_131943;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0029715.
BDGP gene expression has embryonic in situ data for CG11444: 35 pix of staining in 24 body parts.
BioGrid reports that CG11444 interacts with CG14317 .
VDRC has 3 RNAi stocks for FBgn0029715 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain236 54 of 4 0.50Down
Head326 94 of 4 0.70Down
Eye319 214 of 4 0.67Down
Thoracicoabdominal ganglion220 64 of 4 0.50Down
Salivary gland776 404 of 4 1.64Up
Crop520 124 of 4 1.10Up
Midgut316 54 of 4 0.70Down
Tubule139 54 of 4 0.30Down
Hindgut354 54 of 4 0.70Down
Heart331 154 of 4 0.70Down
Fat body416 464 of 4 0.88None
Ovary671 174 of 4 1.40Up
Testis327 124 of 4 0.70Down
Male accessory glands689 64 of 4 1.50Up
Virgin spermatheca239 114 of 4 0.50Down
Mated spermatheca274 294 of 4 0.58Down
Adult carcass319 54 of 4 0.70Down
Larval CNS492 484 of 4 1.04None
Larval Salivary gland1013 334 of 4 2.14Up
Larval midgut195 74 of 4 0.41Down
Larval tubule408 44 of 4 0.90Down
Larval hindgut395 284 of 4 0.84None
Larval fat body442 384 of 4 0.90None
Larval trachea478 214 of 4 1.01None
Larval carcass439 394 of 4 0.93None
S2 cells (growing)361 44 of 4 0.76Down
Whole fly473 84 of 4

Looking for CG11444-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime