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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11447-RA through 18771 annotations produced 1 hits



(CG11447):

Annotation Number : CG11447
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038737
Gbrowse : chr3R:15687336-15688324 (+) // 100.0 //
Probeset : 1640701_at
Accessions : protein= NP_650835;, nucleotide= NM_142578;
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // infe
FlyMine data for FBgn0038737.
Homophila reports that CG11447 is a close match (2e-16) to human gene FTSJ1;JM23;MRX44;MRX9;SPB1 (NP_803188), a gene associated with Mental retardation, X-linked-9, 309549 (3).
VDRC has 2 RNAi stocks for FBgn0038737 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain90 ± 44 of 4 1.10None
Head80 ± 64 of 4 1.00None
Eye79 ± 44 of 4 0.98None
Thoracicoabdominal ganglion87 ± 74 of 4 1.10None
Salivary gland115 ± 134 of 4 1.42None
Crop88 ± 14 of 4 1.10None
Midgut106 ± 44 of 4 1.30Up
Tubule120 ± 54 of 4 1.50Up
Hindgut114 ± 34 of 4 1.40Up
Heart87 ± 34 of 4 1.07None
Fat body94 ± 74 of 4 1.16Up
Ovary86 ± 44 of 4 1.10None
Testis33 ± 21 of 4 0.40Down
Male accessory glands88 ± 84 of 4 1.10None
Virgin spermatheca49 ± 54 of 4 0.61Down
Mated spermatheca57 ± 34 of 4 0.71Down
Adult carcass116 ± 54 of 4 1.40Up
Larval CNS72 ± 64 of 4 0.89None
Larval Salivary gland111 ± 44 of 4 1.38Up
Larval midgut69 ± 14 of 4 0.85Down
Larval tubule69 ± 14 of 4 0.90None
Larval hindgut78 ± 34 of 4 0.97None
Larval fat body54 ± 54 of 4 0.70Down
Larval trachea61 ± 64 of 4 0.76Down
Larval carcass67 ± 14 of 4 0.83Down
S2 cells (growing)98 ± 24 of 4 1.21Up
Whole fly81 ± 34 of 4

Looking for CG11447-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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