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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11451-RA through 18771 annotations produced 1 hits



CG11451 (Spc105R):

Annotation Number : CG11451
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037025
Gbrowse : chr3L:20793642-20799958 (+) // 100.0 //
Probeset : 1628318_at
Accessions : protein= NP_649259;, nucleotide= NM_141002;
Pathway : 0000940 // condensed chromosome outer kinetochore // inferred from direct assay
FlyMine data for FBgn0037025.
BDGP gene expression has embryonic in situ data for CG11451: 13 pix of staining in 10 body parts.
BioGrid reports that CG11451 interacts with CG13326 CG33531 .
TRiP has 4 RNAi stocks for FBgn0037025 available for purchase.
VDRC has 4 RNAi stocks for FBgn0037025 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 03 of 4 0.10Down
Head7 ± 12 of 4 0.10Down
Eye10 ± 13 of 4 0.13Down
Thoracicoabdominal ganglion10 ± 03 of 4 0.10Down
Salivary gland15 ± 41 of 4 0.19Down
Crop6 ± 00 of 4 0.10Down
Midgut10 ± 11 of 4 0.10Down
Tubule6 ± 11 of 4 0.10Down
Hindgut9 ± 14 of 4 0.10Down
Heart5 ± 10 of 4 0.07Down
Fat body10 ± 34 of 4 0.13Down
Ovary260 ± 44 of 4 3.30Up
Testis80 ± 54 of 4 1.00None
Male accessory glands6 ± 00 of 4 0.10Down
Virgin spermatheca6 ± 01 of 4 0.09Down
Mated spermatheca11 ± 22 of 4 0.14Down
Adult carcass11 ± 32 of 4 0.10Down
Larval CNS325 ± 144 of 4 4.13Up
Larval Salivary gland8 ± 00 of 4 0.10Down
Larval midgut12 ± 32 of 4 0.16Down
Larval tubule8 ± 11 of 4 0.10Down
Larval hindgut18 ± 04 of 4 0.23Down
Larval fat body24 ± 04 of 4 0.30Down
Larval trachea48 ± 74 of 4 0.61Down
Larval carcass39 ± 54 of 4 0.50Down
S2 cells (growing)189 ± 104 of 4 2.40Up
Whole fly78 ± 44 of 4

Looking for CG11451-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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