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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG11453-RA through 18771 annotations produced 1 hits


(CG11453):

Annotation Number : CG11453
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038734
Gbrowse : chr3R:15609244-15611252 (+) // 100.0 //
Probeset : 1626098_at
Accessions : protein= NP_650832;, nucleotide= NM_142575;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0016207 // 4-coumarate-CoA ligase activity // i
FlyMine data for FBgn0038734.
BDGP gene expression has embryonic in situ data for CG11453: 9 pix of staining in 3 body parts.
VDRC has 2 RNAi stocks for FBgn0038734 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 0.10Down
Head3 ± 10 of 4 0.20Down
Eye6 ± 10 of 4 0.41Down
Thoracicoabdominal ganglion2 ± 10 of 4 0.10Down
Salivary gland1 ± 00 of 4 0.09Down
Crop1 ± 00 of 4 0.10Down
Midgut165 ± 74 of 410.10Up
Tubule125 ± 154 of 4 7.60Up
Hindgut40 ± 24 of 4 2.50Up
Heart4 ± 10 of 4 0.25Down
Fat body11 ± 60 of 4 0.69None
Ovary3 ± 10 of 4 0.20Down
Testis0 ± 00 of 4 0.00Down
Male accessory glands1 ± 00 of 4 0.10Down
Virgin spermatheca7 ± 10 of 4 0.43Down
Mated spermatheca11 ± 40 of 4 0.67None
Adult carcass3 ± 00 of 4 0.20Down
Larval CNS2 ± 10 of 4 0.14Down
Larval Salivary gland1 ± 00 of 4 0.08Down
Larval midgut347 ± 154 of 421.18Up
Larval tubule114 ± 84 of 4 7.00Up
Larval hindgut50 ± 54 of 4 3.10Up
Larval fat body0 ± 00 of 4 0.00Down
Larval trachea1 ± 00 of 4 0.09Down
Larval carcass1 ± 00 of 4 0.09Down
S2 cells (growing)0 ± 00 of 4 0.05Down
Whole fly16 ± 11 of 4

Looking for CG11453-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime