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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11455-RA through 18771 annotations produced 1 hits



NADH ubiquinone oxidoreductase 15 kDa /// (CG11455 /// CG3436):

Annotation Number : CG11455
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031228
Gbrowse : chr2L:155336-156017 (+) // 100.0 //
Probeset : 1634783_s_at
Accessions : protein= NP_001162841; /// NP_001162842; /// NP_001162843; /// NP_722612; /// NP_722613;, nucleotide= NM_001169370; /// NM_001169371; /// NM_001169372; /// NM_164371; /// NM_164372;
Pathway : via spliceosome // inferred from sequence similarity /// 0000398 // nuclear mRNA splicing
Interpro : via spliceosome // inferred from curator /// 0006120 // mitochondrial electron transport
FlyMine data for FBgn0031228.
BDGP gene expression has embryonic in situ data for CG11455: 13 pix of staining in 12 body parts.
BioGrid reports that CG11455 interacts with CG6195 CG14478 CG6667 .
VDRC has 2 RNAi stocks for FBgn0031228 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain933 ± 114 of 4 1.20Up
Head1161 ± 204 of 4 1.50Up
Eye1580 ± 454 of 4 2.07Up
Thoracicoabdominal ganglion1217 ± 504 of 4 1.60Up
Salivary gland1669 ± 544 of 4 2.19Up
Crop1000 ± 454 of 4 1.30Up
Midgut1221 ± 334 of 4 1.60Up
Tubule1139 ± 214 of 4 1.50Up
Hindgut1358 ± 294 of 4 1.80Up
Heart1154 ± 324 of 4 1.52Up
Fat body1477 ± 654 of 4 1.94Up
Ovary572 ± 74 of 4 0.80Down
Testis631 ± 74 of 4 0.80Down
Male accessory glands804 ± 154 of 4 1.10None
Virgin spermatheca2032 ± 814 of 4 2.67Up
Mated spermatheca1669 ± 1024 of 4 2.19Up
Adult carcass1575 ± 1014 of 4 2.10Up
Larval CNS745 ± 404 of 4 0.98None
Larval Salivary gland1104 ± 404 of 4 1.45Up
Larval midgut1348 ± 314 of 4 1.77Up
Larval tubule1122 ± 604 of 4 1.50Up
Larval hindgut1492 ± 494 of 4 1.96Up
Larval fat body778 ± 484 of 4 1.00None
Larval trachea745 ± 184 of 4 0.98None
Larval carcass1333 ± 1044 of 4 1.75Up
S2 cells (growing)501 ± 74 of 4 0.66Down
Whole fly761 ± 364 of 4

Looking for CG11455-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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