Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11459-RA through 18771 annotations produced 1 hits



/// (CG11459 /// DsimGD19566):

Annotation Number : CG11459
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037396
Gbrowse : chr3R:1851831-1852962 (-) // 100.0 //
Probeset : 1637072_at
Accessions : protein= NP_649608;, nucleotide= NM_141351;
Interpro : 0004197 // cysteine-type endopeptidase activity // inferred from electronic annotation /// 0004197 // cysteine-type endo
FlyMine data for FBgn0037396.
BDGP gene expression has embryonic in situ data for CG11459: 20 pix of staining in 2 body parts.
Homophila reports that CG11459 is a close match (2e-22) to human gene CPPI;CTSC;HMS;JPD;PALS;PLS (NP_001805), a gene associated with Haim-Munk syndrome, 245010 (3);Papillon-Lefevre syndrome, 245000 (3);Periodontitis, juvenile, 170650 (3).
VDRC has 4 RNAi stocks for FBgn0037396 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 11 of 4 0.10Down
Head190 ± 234 of 4 3.50Up
Eye96 ± 154 of 4 1.75None
Thoracicoabdominal ganglion4 ± 10 of 4 0.10Down
Salivary gland20 ± 41 of 4 0.36Down
Crop4 ± 10 of 4 0.10Down
Midgut9 ± 00 of 4 0.20Down
Tubule9 ± 21 of 4 0.20Down
Hindgut13 ± 14 of 4 0.20Down
Heart205 ± 244 of 4 3.74Up
Fat body482 ± 264 of 4 8.78Up
Ovary1 ± 00 of 4 0.00Down
Testis2 ± 00 of 4 0.10Down
Male accessory glands4 ± 20 of 4 0.10Down
Virgin spermatheca506 ± 1064 of 4 9.22Up
Mated spermatheca827 ± 1844 of 415.06Up
Adult carcass235 ± 294 of 4 4.30Up
Larval CNS2 ± 10 of 4 0.04Down
Larval Salivary gland18 ± 34 of 4 0.34Down
Larval midgut7 ± 10 of 4 0.14Down
Larval tubule16 ± 33 of 4 0.30Down
Larval hindgut4 ± 10 of 4 0.09Down
Larval fat body4313 ± 5724 of 478.50Up
Larval trachea6 ± 32 of 4 0.11Down
Larval carcass5 ± 11 of 4 0.09Down
S2 cells (growing)3 ± 00 of 4 0.06Down
Whole fly55 ± 54 of 4

Looking for CG11459-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime