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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1147 through 18771 annotations produced 8 hits



CG11473 (CG42492):

Annotation Number : CG17761
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259994
Gbrowse : chrX:5535921-5537098 (-) // 100.0 //
Probeset : 1627652_at
Accessions : protein= NP_001162676; /// NP_572237; /// NP_652522;, nucleotide= NM_001169205; /// NM_132009; /// NM_132009; /// NM_144265; /// NM_144265;
FlyMine data for FBgn0259994.
VDRC has 2 RNAi stocks for FBgn0259994 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain78 ± 34 of 423.50Up
Head14 ± 22 of 4 4.20Up
Eye43 ± 44 of 412.97Up
Thoracicoabdominal ganglion52 ± 54 of 415.60Up
Salivary gland4 ± 10 of 4 1.25None
Crop3 ± 10 of 4 1.00None
Midgut1 ± 00 of 4 0.40None
Tubule1 ± 00 of 4 0.50Down
Hindgut23 ± 14 of 4 6.90Up
Heart6 ± 11 of 4 1.85None
Fat body8 ± 30 of 4 2.57Up
Ovary2 ± 00 of 4 0.70None
Testis2 ± 10 of 4 0.90None
Male accessory glands3 ± 10 of 4 1.10None
Virgin spermatheca5 ± 10 of 4 1.64None
Mated spermatheca11 ± 31 of 4 3.39None
Adult carcass2 ± 00 of 4 0.70None
Larval CNS34 ± 24 of 410.37Up
Larval Salivary gland1 ± 00 of 4 0.44None
Larval midgut1 ± 00 of 4 0.46None
Larval tubule2 ± 00 of 4 0.70None
Larval hindgut3 ± 10 of 4 1.12None
Larval fat body2 ± 10 of 4 0.80None
Larval trachea1 ± 00 of 4 0.42None
Larval carcass3 ± 10 of 4 0.94None
S2 cells (growing)2 ± 00 of 4 0.68None
Whole fly3 ± 10 of 4



(CG11474):

Annotation Number : CG11474
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034688
Gbrowse : chr2R:17958917-17960948 (-) // 100.0 //
Probeset : 1633513_a_at
Accessions : protein= NP_611634; /// NP_726153;, nucleotide= NM_137790; /// NM_166504;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0034688.
BDGP gene expression has embryonic in situ data for CG11474: 16 pix of staining in 4 body parts.
BioGrid reports that CG11474 interacts with CG5149 .
VDRC has 3 RNAi stocks for FBgn0034688 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain138 ± 24 of 4 1.40Up
Head117 ± 74 of 4 1.20None
Eye90 ± 44 of 4 0.91None
Thoracicoabdominal ganglion157 ± 34 of 4 1.60Up
Salivary gland32 ± 33 of 4 0.33Down
Crop121 ± 44 of 4 1.20Up
Midgut67 ± 14 of 4 0.70Down
Tubule156 ± 104 of 4 1.60Up
Hindgut97 ± 04 of 4 1.00None
Heart178 ± 84 of 4 1.81Up
Fat body169 ± 274 of 4 1.71Up
Ovary124 ± 64 of 4 1.30Up
Testis325 ± 134 of 4 3.30Up
Male accessory glands12 ± 12 of 4 0.10Down
Virgin spermatheca93 ± 74 of 4 0.94None
Mated spermatheca92 ± 104 of 4 0.93None
Adult carcass158 ± 64 of 4 1.60Up
Larval CNS42 ± 44 of 4 0.43Down
Larval Salivary gland67 ± 74 of 4 0.69Down
Larval midgut48 ± 64 of 4 0.49Down
Larval tubule63 ± 44 of 4 0.60Down
Larval hindgut59 ± 24 of 4 0.60Down
Larval fat body1125 ± 1444 of 411.40Up
Larval trachea38 ± 34 of 4 0.39Down
Larval carcass153 ± 224 of 4 1.55None
S2 cells (growing)62 ± 34 of 4 0.63Down
Whole fly98 ± 64 of 4



dpr8 (dpr8):

Annotation Number : CG32600
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052600
Gbrowse : chrX:14216258-14356404 (+) // 100.0 //
Probeset : 1625732_at
Accessions : protein= NP_727781;, nucleotide= NM_167408;
FlyMine data for FBgn0052600.
TRiP has 1 RNAi stocks for FBgn0052600 available for purchase.
VDRC has 4 RNAi stocks for FBgn0052600 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain264 ± 304 of 439.20Up
Head44 ± 64 of 4 6.60Up
Eye19 ± 14 of 4 2.86Up
Thoracicoabdominal ganglion137 ± 104 of 420.30Up
Salivary gland7 ± 10 of 4 1.05None
Crop0 ± 00 of 4 0.10Down
Midgut2 ± 00 of 4 0.30Down
Tubule2 ± 00 of 4 0.40Down
Hindgut5 ± 11 of 4 0.70None
Heart3 ± 00 of 4 0.51Down
Fat body15 ± 44 of 4 2.24Up
Ovary1 ± 00 of 4 0.30Down
Testis0 ± 00 of 4 0.10Down
Male accessory glands7 ± 11 of 4 1.10None
Virgin spermatheca10 ± 13 of 4 1.50None
Mated spermatheca6 ± 12 of 4 1.02None
Adult carcass5 ± 10 of 4 0.90None
Larval CNS113 ± 304 of 416.87Up
Larval Salivary gland4 ± 10 of 4 0.63None
Larval midgut2 ± 00 of 4 0.32Down
Larval tubule2 ± 10 of 4 0.40Down
Larval hindgut2 ± 10 of 4 0.37Down
Larval fat body3 ± 10 of 4 0.50None
Larval trachea3 ± 10 of 4 0.46Down
Larval carcass2 ± 01 of 4 0.39Down
S2 cells (growing)1 ± 10 of 4 0.29Down
Whole fly6 ± 03 of 4



(CG11475):

Annotation Number : CG11475
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034687
Gbrowse : chr2R:17957227-17958791 (-) // 100.0 //
Probeset : 1624487_at
Accessions : protein= NP_611633;, nucleotide= NM_137789;
FlyMine data for FBgn0034687.
VDRC has 3 RNAi stocks for FBgn0034687 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 10 of 4 0.10Down
Head5 ± 10 of 4 0.10Down
Eye2 ± 00 of 4 0.05Down
Thoracicoabdominal ganglion10 ± 10 of 4 0.20Down
Salivary gland9 ± 11 of 4 0.21Down
Crop9 ± 01 of 4 0.20Down
Midgut2 ± 10 of 4 0.10Down
Tubule9 ± 10 of 4 0.20Down
Hindgut9 ± 11 of 4 0.20Down
Heart3 ± 11 of 4 0.09Down
Fat body15 ± 53 of 4 0.35Down
Ovary3 ± 00 of 4 0.10Down
Testis475 ± 124 of 410.90Up
Male accessory glands6 ± 20 of 4 0.20Down
Virgin spermatheca14 ± 13 of 4 0.32Down
Mated spermatheca12 ± 23 of 4 0.29Down
Adult carcass8 ± 30 of 4 0.20Down
Larval CNS11 ± 22 of 4 0.26Down
Larval Salivary gland5 ± 10 of 4 0.12Down
Larval midgut8 ± 10 of 4 0.20Down
Larval tubule4 ± 10 of 4 0.10Down
Larval hindgut4 ± 10 of 4 0.11Down
Larval fat body62 ± 124 of 4 1.40None
Larval trachea6 ± 41 of 4 0.16Down
Larval carcass8 ± 03 of 4 0.20Down
S2 cells (growing)7 ± 10 of 4 0.16Down
Whole fly43 ± 24 of 4



(CG11470):

Annotation Number : CG11470
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039671
Gbrowse : chr3R:25414714-25415484 (-) // 100.0 //
Probeset : 1635791_at
Accessions : protein= NP_651700;, nucleotide= NM_143443;
FlyMine data for FBgn0039671.
VDRC has 2 RNAi stocks for FBgn0039671 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.30None
Head3 ± 10 of 4 0.70None
Eye1 ± 00 of 4 0.23Down
Thoracicoabdominal ganglion5 ± 10 of 4 0.90None
Salivary gland10 ± 20 of 4 1.96None
Crop6 ± 10 of 4 1.30None
Midgut34 ± 44 of 4 6.60Up
Tubule4 ± 00 of 4 0.80None
Hindgut2 ± 00 of 4 0.50Down
Heart1 ± 00 of 4 0.20Down
Fat body13 ± 60 of 4 2.59None
Ovary1 ± 00 of 4 0.30Down
Testis5 ± 10 of 4 1.10None
Male accessory glands2 ± 10 of 4 0.50None
Virgin spermatheca8 ± 10 of 4 1.62None
Mated spermatheca7 ± 20 of 4 1.33None
Adult carcass6 ± 20 of 4 1.20None
Larval CNS9 ± 43 of 4 1.80None
Larval Salivary gland4 ± 10 of 4 0.81None
Larval midgut3952 ± 1324 of 4752.91Up
Larval tubule7 ± 30 of 4 1.50None
Larval hindgut6 ± 11 of 4 1.30None
Larval fat body17 ± 52 of 4 3.20None
Larval trachea1 ± 10 of 4 0.34Down
Larval carcass3 ± 00 of 4 0.68None
S2 cells (growing)1 ± 00 of 4 0.27Down
Whole fly5 ± 00 of 4



Isoleucyl-tRNA synthetase (Aats-ile):

Annotation Number : CG11471
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027086
Gbrowse : chr3L:22281761-22285910 (+) // 100.0 //
Probeset : 1631106_s_at
Accessions : protein= NP_524840; /// NP_730716; /// NP_788565;, nucleotide= NM_080101; /// NM_168952; /// NM_176387;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // in
FlyMine data for FBgn0027086.
BDGP gene expression has embryonic in situ data for Aats-ile: 12 pix of staining in 22 body parts.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain161 ± 44 of 4 0.40Down
Head237 ± 74 of 4 0.60Down
Eye271 ± 314 of 4 0.71Down
Thoracicoabdominal ganglion191 ± 74 of 4 0.50Down
Salivary gland716 ± 224 of 4 1.87Up
Crop380 ± 104 of 4 1.00None
Midgut305 ± 64 of 4 0.80Down
Tubule298 ± 234 of 4 0.80Down
Hindgut289 ± 34 of 4 0.80Down
Heart261 ± 74 of 4 0.69Down
Fat body422 ± 384 of 4 1.11None
Ovary589 ± 134 of 4 1.50Up
Testis108 ± 34 of 4 0.30Down
Male accessory glands815 ± 404 of 4 2.10Up
Virgin spermatheca269 ± 104 of 4 0.71Down
Mated spermatheca347 ± 154 of 4 0.91None
Adult carcass245 ± 94 of 4 0.60Down
Larval CNS503 ± 304 of 4 1.32Up
Larval Salivary gland1009 ± 94 of 4 2.64Up
Larval midgut234 ± 134 of 4 0.61Down
Larval tubule193 ± 64 of 4 0.50Down
Larval hindgut404 ± 184 of 4 1.06None
Larval fat body202 ± 204 of 4 0.50Down
Larval trachea560 ± 704 of 4 1.47Up
Larval carcass475 ± 574 of 4 1.24None
S2 cells (growing)933 ± 364 of 4 2.44Up
Whole fly382 ± 174 of 4



neuropeptide F receptor (NPFR1):

Annotation Number : CG1147
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037408
Gbrowse : chr3R:2013121-2021136 (+) // 100.0 //
Probeset : 1628982_at
Accessions : protein= NP_524245;, nucleotide= NM_079521;
Pathway : 0016021 // integral to membrane // inferred from sequence or structural similarity /// 0016021 // integral to membrane /
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0037408.
BDGP gene expression has embryonic in situ data for NPFR1: 6 pix of staining in 6 body parts.
Homophila reports that CG1147 is a close match (9e-11) to human gene CCR2;CMKBR2 (NP_000639), a gene associated with {HIV infection, susceptibility/resistance to} (3).
TRiP has 1 RNAi stocks for FBgn0037408 available for purchase.
VDRC has 2 RNAi stocks for FBgn0037408 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain85 ± 34 of 4 9.70Up
Head19 ± 14 of 4 2.20Up
Eye9 ± 12 of 4 1.05None
Thoracicoabdominal ganglion66 ± 44 of 4 7.50Up
Salivary gland14 ± 30 of 4 1.61None
Crop36 ± 34 of 4 4.10Up
Midgut21 ± 24 of 4 2.40Up
Tubule108 ± 364 of 412.20Up
Hindgut11 ± 04 of 4 1.30Up
Heart3 ± 01 of 4 0.45Down
Fat body7 ± 13 of 4 0.82None
Ovary3 ± 12 of 4 0.40Down
Testis14 ± 04 of 4 1.60Up
Male accessory glands7 ± 10 of 4 0.90None
Virgin spermatheca9 ± 03 of 4 1.10None
Mated spermatheca10 ± 03 of 4 1.18None
Adult carcass8 ± 42 of 4 1.00None
Larval CNS68 ± 24 of 4 7.74Up
Larval Salivary gland6 ± 22 of 4 0.69None
Larval midgut10 ± 04 of 4 1.18None
Larval tubule45 ± 44 of 4 5.10Up
Larval hindgut6 ± 03 of 4 0.67Down
Larval fat body10 ± 12 of 4 1.20None
Larval trachea5 ± 22 of 4 0.63None
Larval carcass8 ± 13 of 4 0.93None
S2 cells (growing)4 ± 12 of 4 0.55Down
Whole fly8 ± 04 of 4



CG11473 (CG42492):

Annotation Number : CG11473
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259994
Gbrowse : chrX:5521696-5531623 (-) // 99.74 //
Probeset : 1631554_at
Accessions : protein= NP_001162676; /// NP_572237; /// NP_652522;, nucleotide= NM_001169205; /// NM_132009; /// NM_132009; /// NM_144265; /// NM_144265;
FlyMine data for FBgn0259994.
VDRC has 2 RNAi stocks for FBgn0259994 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1410 ± 244 of 458.10Up
Head154 ± 144 of 4 6.40Up
Eye225 ± 204 of 4 9.31Up
Thoracicoabdominal ganglion921 ± 344 of 438.00Up
Salivary gland18 ± 31 of 4 0.75None
Crop5 ± 00 of 4 0.20Down
Midgut2 ± 10 of 4 0.10Down
Tubule4 ± 00 of 4 0.20Down
Hindgut16 ± 24 of 4 0.70Down
Heart7 ± 12 of 4 0.30Down
Fat body23 ± 94 of 4 0.97None
Ovary1 ± 00 of 4 0.10Down
Testis2 ± 00 of 4 0.10Down
Male accessory glands3 ± 10 of 4 0.10Down
Virgin spermatheca23 ± 24 of 4 0.95None
Mated spermatheca25 ± 53 of 4 1.07None
Adult carcass9 ± 10 of 4 0.40Down
Larval CNS1097 ± 1204 of 445.28Up
Larval Salivary gland3 ± 20 of 4 0.13Down
Larval midgut2 ± 00 of 4 0.10Down
Larval tubule4 ± 10 of 4 0.20Down
Larval hindgut2 ± 00 of 4 0.10Down
Larval fat body4 ± 20 of 4 0.20Down
Larval trachea5 ± 22 of 4 0.21Down
Larval carcass1 ± 00 of 4 0.05Down
S2 cells (growing)0 ± 00 of 4 0.01Down
Whole fly24 ± 14 of 4

Looking for CG1147. 8 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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