FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG11471-RC through 18771 annotations produced 1 hits

Isoleucyl-tRNA synthetase (Aats-ile):

Annotation Number : CG11471
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027086
Gbrowse : chr3L:22281761-22285910 (+) // 100.0 //
Probeset : 1631106_s_at
Accessions : protein= NP_524840; /// NP_730716; /// NP_788565;, nucleotide= NM_080101; /// NM_168952; /// NM_176387;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // in
FlyMine data for FBgn0027086.
BDGP gene expression has embryonic in situ data for Aats-ile: 12 pix of staining in 22 body parts.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	161 ± 4	4 of 4	0.40	Down
Head	237 ± 7	4 of 4	0.60	Down
Eye	271 ± 31	4 of 4	0.71	Down
Thoracicoabdominal ganglion	191 ± 7	4 of 4	0.50	Down
Salivary gland	716 ± 22	4 of 4	1.87	Up
Crop	380 ± 10	4 of 4	1.00	None
Midgut	305 ± 6	4 of 4	0.80	Down
Tubule	298 ± 23	4 of 4	0.80	Down
Hindgut	289 ± 3	4 of 4	0.80	Down
Heart	261 ± 7	4 of 4	0.69	Down
Fat body	422 ± 38	4 of 4	1.11	None
Ovary	589 ± 13	4 of 4	1.50	Up
Testis	108 ± 3	4 of 4	0.30	Down
Male accessory glands	815 ± 40	4 of 4	2.10	Up
Virgin spermatheca	269 ± 10	4 of 4	0.71	Down
Mated spermatheca	347 ± 15	4 of 4	0.91	None
Adult carcass	245 ± 9	4 of 4	0.60	Down
Larval CNS	503 ± 30	4 of 4	1.32	Up
Larval Salivary gland	1009 ± 9	4 of 4	2.64	Up
Larval midgut	234 ± 13	4 of 4	0.61	Down
Larval tubule	193 ± 6	4 of 4	0.50	Down
Larval hindgut	404 ± 18	4 of 4	1.06	None
Larval fat body	202 ± 20	4 of 4	0.50	Down
Larval trachea	560 ± 70	4 of 4	1.47	Up
Larval carcass	475 ± 57	4 of 4	1.24	None
S2 cells (growing)	933 ± 36	4 of 4	2.44	Up
Whole fly	382 ± 17	4 of 4

Looking for CG11471-RC. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720