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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG11489-RC through 18771 annotations produced 1 hits

air traffic controller (srpk79D):

Annotation Number : CG11489
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025702
Gbrowse : chr3L:22267108-22277436 (+) // 100.0 //
Probeset : 1631114_a_at
Accessions : protein= NP_001097660; /// NP_649387;, nucleotide= NM_001104190; /// NM_141130;
Pathway : 0048786 // presynaptic active zone // inferred from direct assay
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred
FlyMine data for FBgn0025702.
BioGrid reports that CG11489 interacts with CG4767 CG9356 CG9493 CG12116 CG13114 CG14228 CG14275 CG15861 CG17510 CG17894 CG1925 CG2238 CG2277 CG2807 CG31140 CG31637 CG31973 CG3297 CG3731 CG4818 CG4835 Dmel CG34168 CG5105 CG5791 CG6864 CG6923 CG7041 CG7109 CG7392 CG7570 CG8715 CG8947 CG9326 .
VDRC has 5 RNAi stocks for FBgn0025702 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain465 74 of 412.40Up
Head100 24 of 4 2.70Up
Eye36 24 of 4 0.98None
Thoracicoabdominal ganglion322 104 of 4 8.60Up
Salivary gland16 22 of 4 0.45Down
Crop69 14 of 4 1.80Up
Midgut9 23 of 4 0.30Down
Tubule5 00 of 4 0.10Down
Hindgut28 34 of 4 0.80None
Heart26 24 of 4 0.71None
Fat body18 74 of 4 0.49Down
Ovary6 04 of 4 0.20Down
Testis17 24 of 4 0.50Down
Male accessory glands9 10 of 4 0.30Down
Virgin spermatheca10 14 of 4 0.27Down
Mated spermatheca9 24 of 4 0.26Down
Adult carcass97 44 of 4 2.60Up
Larval CNS467 644 of 412.45Up
Larval Salivary gland12 14 of 4 0.33Down
Larval midgut7 03 of 4 0.20Down
Larval tubule5 11 of 4 0.10Down
Larval hindgut22 44 of 4 0.59Down
Larval fat body11 22 of 4 0.30Down
Larval trachea5 12 of 4 0.15Down
Larval carcass167 314 of 4 4.45Up
S2 cells (growing)18 14 of 4 0.49Down
Whole fly37 44 of 4

Looking for CG11489-RC. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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