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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1149-RA through 18771 annotations produced 1 hits



MstProx (MstProx):

Annotation Number : CG1149
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015770
Gbrowse : chr3R:3192028-3194494 (-) // 100.0 //
Probeset : 1627210_at
Accessions : protein= NP_649719;, nucleotide= NM_141462;
Pathway : 0005886 // plasma membrane // non-traceable author statement /// 0016020 // membrane // inferred from electronic annotat
Interpro : 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0004888 // transmembrane receptor
FlyMine data for FBgn0015770.
TRiP has 1 RNAi stocks for FBgn0015770 available for purchase.
VDRC has 2 RNAi stocks for FBgn0015770 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 11 of 4 0.60Down
Head6 ± 11 of 4 0.80None
Eye4 ± 10 of 4 0.54None
Thoracicoabdominal ganglion5 ± 11 of 4 0.60None
Salivary gland13 ± 51 of 4 1.46None
Crop7 ± 11 of 4 0.90None
Midgut3 ± 00 of 4 0.30Down
Tubule7 ± 10 of 4 0.90None
Hindgut9 ± 01 of 4 1.10None
Heart5 ± 10 of 4 0.67None
Fat body9 ± 41 of 4 1.09None
Ovary3 ± 11 of 4 0.40Down
Testis7 ± 10 of 4 0.80None
Male accessory glands9 ± 20 of 4 1.10None
Virgin spermatheca10 ± 11 of 4 1.15None
Mated spermatheca9 ± 22 of 4 1.08None
Adult carcass16 ± 30 of 4 1.80None
Larval CNS2 ± 00 of 4 0.33Down
Larval Salivary gland8 ± 20 of 4 0.99None
Larval midgut8 ± 20 of 4 0.90None
Larval tubule9 ± 11 of 4 1.10None
Larval hindgut6 ± 12 of 4 0.72None
Larval fat body8 ± 20 of 4 1.00None
Larval trachea6 ± 32 of 4 0.74None
Larval carcass6 ± 20 of 4 0.67None
S2 cells (growing)5 ± 00 of 4 0.67Down
Whole fly8 ± 01 of 4

Looking for CG1149-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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