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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11505-RA through 18771 annotations produced 1 hits



(CG11505):

Annotation Number : CG11505
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035424
Gbrowse : chr3L:3224837-3232320 (+) // 100.0 //
Probeset : 1637770_a_at
Accessions : protein= NP_647793; /// NP_728843; /// NP_995985;, nucleotide= NM_139536; /// NM_168007; /// NM_206263;
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from elect
FlyMine data for FBgn0035424.
BioGrid reports that CG11505 interacts with CG13047 CG13114 CG13857 CG14275 CG14369 CG14981 CG14996 CG17018 CG1740 CG2962 CG30497 CG32711 CG3510 CG4027 CG4818 Dmel CG34168 CG6235 CG8893 CG9050 CG1252 CG2360 CG33197 .
VDRC has 3 RNAi stocks for FBgn0035424 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 ± 20 of 4 0.20Down
Head2 ± 00 of 4 0.10Down
Eye0 ± 00 of 4 0.01Down
Thoracicoabdominal ganglion6 ± 20 of 4 0.20Down
Salivary gland18 ± 60 of 4 0.45Down
Crop3 ± 10 of 4 0.10Down
Midgut5 ± 10 of 4 0.10Down
Tubule3 ± 00 of 4 0.10Down
Hindgut5 ± 10 of 4 0.10Down
Heart3 ± 10 of 4 0.09Down
Fat body3 ± 30 of 4 0.08Down
Ovary121 ± 34 of 4 3.00Up
Testis259 ± 144 of 4 6.40Up
Male accessory glands11 ± 20 of 4 0.30Down
Virgin spermatheca6 ± 10 of 4 0.16Down
Mated spermatheca5 ± 20 of 4 0.14Down
Adult carcass14 ± 60 of 4 0.40Down
Larval CNS4 ± 10 of 4 0.12Down
Larval Salivary gland3 ± 10 of 4 0.07Down
Larval midgut8 ± 10 of 4 0.22Down
Larval tubule14 ± 00 of 4 0.40Down
Larval hindgut4 ± 00 of 4 0.12Down
Larval fat body29 ± 93 of 4 0.70None
Larval trachea2 ± 10 of 4 0.06Down
Larval carcass3 ± 10 of 4 0.08Down
S2 cells (growing)40 ± 34 of 4 1.00None
Whole fly40 ± 34 of 4

Looking for CG11505-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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