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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11513-RA through 18771 annotations produced 1 hits



chr3L:3461322-3466232 (+) // 100.0 // (armitage):

Annotation Number : CG11513
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1623907_at
Accessions : protein= , nucleotide= NP_001014556; /// NP_647816;
Pathway : "0000184 // nuclear-transcribed mRNA catabolic process
Interpro : nonsense-mediated decay // inferred from mutant phenotype /// 0000184 // nuclear-transcribed mRNA catabolic process
FlyMine data for full length.
Homophila reports that CG11513 is a close match (8e-16) to human gene CATF1;HMN6;IGHMBP2;SMARD1;SMUBP2 (NP_002171), a gene associated with Neuronopathy, distal hereditary motor, type VI, 604320 (3).


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain23 ± 14 of 4 0.20Down
Head15 ± 14 of 4 0.10Down
Eye15 ± 14 of 4 0.14Down
Thoracicoabdominal ganglion22 ± 14 of 4 0.20Down
Salivary gland28 ± 63 of 4 0.26Down
Crop14 ± 04 of 4 0.10Down
Midgut18 ± 23 of 4 0.20Down
Tubule20 ± 33 of 4 0.20Down
Hindgut15 ± 13 of 4 0.10Down
Heart11 ± 13 of 4 0.10Down
Fat body26 ± 54 of 4 0.24Down
Ovary253 ± 114 of 4 2.30Up
Testis66 ± 24 of 4 0.60Down
Male accessory glands30 ± 34 of 4 0.30Down
Virgin spermatheca22 ± 24 of 4 0.21Down
Mated spermatheca17 ± 24 of 4 0.16Down
Adult carcass21 ± 23 of 4 0.20Down
Larval CNS107 ± 44 of 4 0.99None
Larval Salivary gland28 ± 14 of 4 0.26Down
Larval midgut21 ± 24 of 4 0.20Down
Larval tubule36 ± 24 of 4 0.30Down
Larval hindgut26 ± 24 of 4 0.24Down
Larval fat body45 ± 24 of 4 0.40Down
Larval trachea37 ± 84 of 4 0.34Down
Larval carcass28 ± 24 of 4 0.26Down
S2 cells (growing)128 ± 24 of 4 1.18None
Whole fly108 ± 84 of 4

Looking for CG11513-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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