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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11517-RA through 18771 annotations produced 1 hits



Protein tyrosine phosphatase 99A (Ptp99A):

Annotation Number : CG11517
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004369
Gbrowse : chr3R:25256446-25256973 (+) // 100.0 //
Probeset : 1624710_at
Accessions : protein= NP_001014683; /// NP_476816; /// NP_651691; /// NP_733288; /// NP_996302;, nucleotide= NM_001014683; /// NM_001014683; /// NM_057468; /// NM_057468; /// NM_143434; /// NM_170409; /// NM_170409; /// NM_206579; /// NM_206579;
Pathway : 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from sequence or str
Interpro : 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine ph
FlyMine data for FBgn0004369.
Homophila reports that CG11517 is a close match (1e-13) to human gene ROBO3;RBIG1;RIG1;HGPPS (NP_071765), a gene associated with Gaze palsy, horizontal, with progressive scoliosis, 607313 (3).
TRiP has 2 RNAi stocks for FBgn0004369 available for purchase.
VDRC has 7 RNAi stocks for FBgn0004369 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 ± 12 of 4 2.00None
Head6 ± 10 of 4 1.40None
Eye7 ± 11 of 4 1.72None
Thoracicoabdominal ganglion9 ± 10 of 4 2.10Up
Salivary gland13 ± 40 of 4 2.90None
Crop4 ± 10 of 4 0.90None
Midgut7 ± 00 of 4 1.60None
Tubule6 ± 00 of 4 1.30Up
Hindgut5 ± 10 of 4 1.20None
Heart4 ± 10 of 4 0.96None
Fat body10 ± 20 of 4 2.25Up
Ovary3 ± 10 of 4 0.80None
Testis2 ± 00 of 4 0.50None
Male accessory glands10 ± 10 of 4 2.30Up
Virgin spermatheca8 ± 11 of 4 1.82None
Mated spermatheca6 ± 10 of 4 1.46None
Adult carcass10 ± 20 of 4 2.30None
Larval CNS4 ± 11 of 4 1.07None
Larval Salivary gland8 ± 10 of 4 1.84None
Larval midgut6 ± 21 of 4 1.31None
Larval tubule6 ± 00 of 4 1.40None
Larval hindgut6 ± 10 of 4 1.41None
Larval fat body7 ± 30 of 4 1.60None
Larval trachea3 ± 10 of 4 0.76None
Larval carcass9 ± 10 of 4 2.08Up
S2 cells (growing)0 ± 00 of 4 0.18None
Whole fly4 ± 10 of 4

Looking for CG11517-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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