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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11526-RA through 18771 annotations produced 1 hits



(CG11526):

Annotation Number : CG11526
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035437
Gbrowse : chr3L:3322273-3328871 (-) // 100.0 //
Probeset : 1632794_a_at
Accessions : protein= NP_647806; /// NP_728867;, nucleotide= NM_139549; /// NM_168023;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0035437.
BioGrid reports that CG11526 interacts with CG16728 CG5038 CG4853 .
TRiP has 1 RNAi stocks for FBgn0035437 available for purchase.
VDRC has 3 RNAi stocks for FBgn0035437 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain276 ± 74 of 4 1.30Up
Head187 ± 54 of 4 0.90Down
Eye181 ± 44 of 4 0.86Down
Thoracicoabdominal ganglion229 ± 74 of 4 1.10None
Salivary gland315 ± 144 of 4 1.50Up
Crop269 ± 34 of 4 1.30Up
Midgut168 ± 74 of 4 0.80Down
Tubule203 ± 44 of 4 1.00None
Hindgut227 ± 44 of 4 1.10Up
Heart175 ± 74 of 4 0.84Down
Fat body164 ± 174 of 4 0.78Down
Ovary285 ± 24 of 4 1.40Up
Testis871 ± 394 of 4 4.10Up
Male accessory glands240 ± 34 of 4 1.10Up
Virgin spermatheca185 ± 54 of 4 0.88Down
Mated spermatheca193 ± 24 of 4 0.92Down
Adult carcass169 ± 74 of 4 0.80Down
Larval CNS326 ± 194 of 4 1.55Up
Larval Salivary gland266 ± 84 of 4 1.27Up
Larval midgut190 ± 124 of 4 0.91None
Larval tubule217 ± 94 of 4 1.00None
Larval hindgut236 ± 104 of 4 1.12None
Larval fat body232 ± 324 of 4 1.10None
Larval trachea202 ± 44 of 4 0.96None
Larval carcass278 ± 154 of 4 1.32Up
S2 cells (growing)256 ± 24 of 4 1.22Up
Whole fly210 ± 34 of 4

Looking for CG11526-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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