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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11529-RA through 18771 annotations produced 1 hits



(CG11529):

Annotation Number : CG11529
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036264
Gbrowse : chr3L:12191006-12191870 (+) // 100.0 //
Probeset : 1634279_at
Accessions : protein= NP_648558;, nucleotide= NM_140301;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0036264.
Homophila reports that CG11529 is a close match (3e-11) to human gene F7 (NP_062562), a gene associated with Factor VII deficiency (3);{Myocardial infarction, decreased susceptibility to} (3).
VDRC has 3 RNAi stocks for FBgn0036264 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 00 of 4 0.30Down
Head49 34 of 4 4.10Up
Eye14 33 of 4 1.15None
Thoracicoabdominal ganglion2 11 of 4 0.20Down
Salivary gland12 30 of 4 1.03None
Crop7 20 of 4 0.60None
Midgut4 10 of 4 0.40Down
Tubule6 00 of 4 0.50Down
Hindgut8 21 of 4 0.70None
Heart3 00 of 4 0.28Down
Fat body5 30 of 4 0.42Down
Ovary4 00 of 4 0.30Down
Testis3 10 of 4 0.30Down
Male accessory glands5 10 of 4 0.40Down
Virgin spermatheca4 10 of 4 0.38Down
Mated spermatheca11 40 of 4 0.93None
Adult carcass80 24 of 4 6.60Up
Larval CNS4 11 of 4 0.38Down
Larval Salivary gland5 10 of 4 0.46Down
Larval midgut6 11 of 4 0.54None
Larval tubule9 11 of 4 0.80None
Larval hindgut44 144 of 4 3.66None
Larval fat body19 52 of 4 1.60None
Larval trachea491 3604 of 440.31None
Larval carcass795 3114 of 465.17None
S2 cells (growing)1 00 of 4 0.16Down
Whole fly12 12 of 4

Looking for CG11529-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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