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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11538-RA through 18771 annotations produced 1 hits



():

Annotation Number : CG11538
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse : chr3L:12122523-12124798 (-) // 100.0 //
Probeset : 1630922_at
Accessions : protein= , nucleotide=


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 00 of 4 0.60None
Head5 10 of 4 0.80None
Eye2 10 of 4 0.34Down
Thoracicoabdominal ganglion4 00 of 4 0.70None
Salivary gland15 10 of 4 2.27Up
Crop5 20 of 4 0.80None
Midgut4 10 of 4 0.70None
Tubule6 00 of 4 0.90None
Hindgut9 10 of 4 1.30None
Heart4 10 of 4 0.67None
Fat body5 20 of 4 0.81None
Ovary4 01 of 4 0.70None
Testis10 03 of 4 1.50None
Male accessory glands4 10 of 4 0.70None
Virgin spermatheca36 94 of 4 5.41None
Mated spermatheca6 11 of 4 1.02None
Adult carcass10 31 of 4 1.60None
Larval CNS2 11 of 4 0.32Down
Larval Salivary gland12 11 of 4 1.89Up
Larval midgut4 10 of 4 0.67None
Larval tubule4 01 of 4 0.70None
Larval hindgut8 03 of 4 1.26None
Larval fat body66 94 of 4 9.90Up
Larval trachea1 10 of 4 0.24Down
Larval carcass5 10 of 4 0.79None
S2 cells (growing)3 00 of 4 0.58None
Whole fly6 12 of 4

Looking for CG11538-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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