FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG11546-RA through 18771 annotations produced 1 hits

lethal (2) 02045 (kermit):

Annotation Number : CG11546
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010504
Gbrowse : chr2R:4034421-4044155 (-) // 100.0 //
Probeset : 1638267_s_at
Accessions : protein= NP_652028; /// NP_724649; /// NP_724650; /// NP_724651;, nucleotide= NM_143771; /// NM_165590; /// NM_165591; /// NM_165592;
Interpro : 0005515 // protein binding // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred
FlyMine data for FBgn0010504.
BDGP gene expression has embryonic in situ data for l(2)02045: 30 pix of staining in 11 body parts.
BioGrid reports that CG11546 interacts with CG12348 CG17489 CG32447 CG33095 CG3403 CG5507 CG7323 CG8136 CG8603 CG12703 CG14277 CG14767 CG15425 CG15811 CG33174 CG5164 CG5248 CG5654 CG5884 CG7492 CG8374 CG9536 CG9865 .
VDRC has 3 RNAi stocks for FBgn0010504 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	32 ± 2	4 of 4	0.10	Down
Head	69 ± 4	4 of 4	0.20	Down
Eye	49 ± 3	4 of 4	0.15	Down
Thoracicoabdominal ganglion	34 ± 1	4 of 4	0.10	Down
Salivary gland	166 ± 23	4 of 4	0.51	Down
Crop	63 ± 1	4 of 4	0.20	Down
Midgut	1264 ± 59	4 of 4	3.90	Up
Tubule	575 ± 58	4 of 4	1.80	Up
Hindgut	463 ± 8	4 of 4	1.40	Up
Heart	37 ± 3	4 of 4	0.12	Down
Fat body	43 ± 9	4 of 4	0.13	Down
Ovary	189 ± 2	4 of 4	0.60	Down
Testis	1000 ± 31	4 of 4	3.10	Up
Male accessory glands	53 ± 2	4 of 4	0.20	Down
Virgin spermatheca	44 ± 1	4 of 4	0.14	Down
Mated spermatheca	45 ± 4	4 of 4	0.14	Down
Adult carcass	51 ± 2	4 of 4	0.20	Down
Larval CNS	75 ± 3	4 of 4	0.23	Down
Larval Salivary gland	81 ± 5	4 of 4	0.25	Down
Larval midgut	991 ± 29	4 of 4	3.03	Up
Larval tubule	821 ± 32	4 of 4	2.50	Up
Larval hindgut	309 ± 6	4 of 4	0.95	None
Larval fat body	120 ± 40	4 of 4	0.40	Down
Larval trachea	85 ± 10	4 of 4	0.26	Down
Larval carcass	114 ± 5	4 of 4	0.35	Down
S2 cells (growing)	264 ± 6	4 of 4	0.81	Down
Whole fly	326 ± 10	4 of 4

Looking for CG11546-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720