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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11560-RA through 18771 annotations produced 1 hits



(CG11560):

Annotation Number : CG11560
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036249
Gbrowse : chr3L:12113162-12114288 (+) // 100.0 //
Probeset : 1634410_at
Accessions : protein= NP_648547;, nucleotide= NM_140290;
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical i
FlyMine data for FBgn0036249.
BioGrid reports that CG11560 interacts with CG11560 CG1487 CG1883 CG4229 .
TRiP has 1 RNAi stocks for FBgn0036249 available for purchase.
VDRC has 1 RNAi stocks for FBgn0036249 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain88 ± 34 of 4 1.20None
Head48 ± 54 of 4 0.60Down
Eye113 ± 24 of 4 1.50Up
Thoracicoabdominal ganglion64 ± 34 of 4 0.80None
Salivary gland67 ± 24 of 4 0.89None
Crop42 ± 34 of 4 0.60Down
Midgut31 ± 43 of 4 0.40Down
Tubule31 ± 03 of 4 0.40Down
Hindgut36 ± 34 of 4 0.50Down
Heart41 ± 44 of 4 0.55Down
Fat body19 ± 50 of 4 0.26Down
Ovary125 ± 44 of 4 1.70Up
Testis29 ± 14 of 4 0.40Down
Male accessory glands104 ± 24 of 4 1.40Up
Virgin spermatheca53 ± 34 of 4 0.70Down
Mated spermatheca68 ± 34 of 4 0.90None
Adult carcass28 ± 22 of 4 0.40Down
Larval CNS81 ± 104 of 4 1.07None
Larval Salivary gland44 ± 44 of 4 0.59Down
Larval midgut39 ± 34 of 4 0.52Down
Larval tubule32 ± 14 of 4 0.40Down
Larval hindgut35 ± 44 of 4 0.47Down
Larval fat body33 ± 24 of 4 0.40Down
Larval trachea65 ± 54 of 4 0.86None
Larval carcass24 ± 22 of 4 0.32Down
S2 cells (growing)43 ± 14 of 4 0.57Down
Whole fly75 ± 64 of 4

Looking for CG11560-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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