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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11592-RA through 18771 annotations produced 1 hits



(CG11592):

Annotation Number : CG11592
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025686
Gbrowse : chr2L:287251-288919 (-) // 100.0 //
Probeset : 1623953_at
Accessions : protein= NP_608515;, nucleotide= NM_134671;
FlyMine data for FBgn0025686.
VDRC has 2 RNAi stocks for FBgn0025686 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 00 of 4 2.30None
Head0 ± 00 of 4 0.50None
Eye1 ± 00 of 4 0.84None
Thoracicoabdominal ganglion4 ± 10 of 4 3.20None
Salivary gland7 ± 40 of 4 5.17None
Crop0 ± 00 of 4 0.40None
Midgut1 ± 00 of 4 1.00None
Tubule5 ± 20 of 4 3.70None
Hindgut9 ± 11 of 4 6.60Up
Heart2965 ± 1724 of 42045.47Up
Fat body62 ± 293 of 442.98Up
Ovary0 ± 00 of 4 0.30None
Testis2 ± 10 of 4 1.60None
Male accessory glands1 ± 00 of 4 1.00None
Virgin spermatheca1 ± 00 of 4 1.19None
Mated spermatheca2 ± 10 of 4 1.91None
Adult carcass85 ± 114 of 459.00Up
Larval CNS0 ± 00 of 4 0.53None
Larval Salivary gland21 ± 43 of 414.66Up
Larval midgut23 ± 33 of 416.48Up
Larval tubule92 ± 74 of 463.60Up
Larval hindgut0 ± 00 of 4 0.41None
Larval fat body10 ± 50 of 4 7.50None
Larval trachea25 ± 441 of 417.26None
Larval carcass71 ± 124 of 448.97Up
S2 cells (growing)0 ± 00 of 4 0.45None
Whole fly1 ± 00 of 4

Looking for CG11592-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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