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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11593-RA through 18771 annotations produced 1 hits



(CG11593):

Annotation Number : CG11593
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035488
Gbrowse : chr3L:4037586-4040482 (-) // 100.0 //
Probeset : 1634182_at
Accessions : protein= NP_647851;, nucleotide= NM_139594;
FlyMine data for FBgn0035488.
Homophila reports that CG11593 is a close match (2e-45) to human gene ATCAY;CLAC;KIAA1872 (NP_149053), a gene associated with Ataxia, cerebellar, Cayman type, 601238 (3).
TRiP has 1 RNAi stocks for FBgn0035488 available for purchase.
VDRC has 4 RNAi stocks for FBgn0035488 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain607 54 of 4 2.30Up
Head264 154 of 4 1.00None
Eye436 94 of 4 1.63Up
Thoracicoabdominal ganglion691 104 of 4 2.60Up
Salivary gland170 34 of 4 0.64Down
Crop263 64 of 4 1.00None
Midgut124 34 of 4 0.50Down
Tubule141 104 of 4 0.50Down
Hindgut171 44 of 4 0.60Down
Heart200 64 of 4 0.75Down
Fat body171 154 of 4 0.64Down
Ovary654 114 of 4 2.40Up
Testis97 24 of 4 0.40Down
Male accessory glands156 84 of 4 0.60Down
Virgin spermatheca209 84 of 4 0.78Down
Mated spermatheca213 124 of 4 0.80Down
Adult carcass132 94 of 4 0.50Down
Larval CNS421 314 of 4 1.58Up
Larval Salivary gland221 104 of 4 0.83None
Larval midgut116 64 of 4 0.43Down
Larval tubule147 64 of 4 0.60Down
Larval hindgut199 44 of 4 0.74Down
Larval fat body149 54 of 4 0.60Down
Larval trachea285 214 of 4 1.06None
Larval carcass233 144 of 4 0.87None
S2 cells (growing)349 74 of 4 1.31Up
Whole fly267 174 of 4

Looking for CG11593-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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