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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11594-RC through 18771 annotations produced 1 hits



(CG11594):

Annotation Number : CG11594
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035484
Gbrowse : chr3L:4022973-4026009 (-) // 100.0 //
Probeset : 1632688_s_at
Accessions : protein= NP_647848; /// NP_728918; /// NP_728919;, nucleotide= NM_139591; /// NM_168046; /// NM_168047;
Interpro : "0005515 // protein binding // inferred from physical interaction /// 0016773 // phosphotransferase activity
FlyMine data for FBgn0035484.
BioGrid reports that CG11594 interacts with CG3662 .
VDRC has 2 RNAi stocks for FBgn0035484 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain59 ± 24 of 4 0.40Down
Head455 ± 414 of 4 2.80Up
Eye207 ± 184 of 4 1.29None
Thoracicoabdominal ganglion56 ± 34 of 4 0.40Down
Salivary gland240 ± 124 of 4 1.50Up
Crop221 ± 24 of 4 1.40Up
Midgut119 ± 94 of 4 0.70None
Tubule1274 ± 1074 of 4 8.00Up
Hindgut191 ± 64 of 4 1.20None
Heart471 ± 374 of 4 2.95Up
Fat body1486 ± 2234 of 4 9.28Up
Ovary8 ± 00 of 4 0.10Down
Testis27 ± 24 of 4 0.20Down
Male accessory glands109 ± 54 of 4 0.70Down
Virgin spermatheca1545 ± 674 of 4 9.66Up
Mated spermatheca1034 ± 1754 of 4 6.46Up
Adult carcass837 ± 294 of 4 5.20Up
Larval CNS33 ± 64 of 4 0.21Down
Larval Salivary gland97 ± 64 of 4 0.61Down
Larval midgut163 ± 224 of 4 1.02None
Larval tubule401 ± 194 of 4 2.50Up
Larval hindgut72 ± 14 of 4 0.45Down
Larval fat body1484 ± 2244 of 4 9.30Up
Larval trachea41 ± 184 of 4 0.26Down
Larval carcass89 ± 74 of 4 0.56Down
S2 cells (growing)8 ± 00 of 4 0.05Down
Whole fly160 ± 144 of 4

Looking for CG11594-RC. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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