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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11598-RA through 18771 annotations produced 1 hits



(CG11598):

Annotation Number : CG11598
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038067
Gbrowse : chr3R:8460550-8461924 (+) // 100.0 //
Probeset : 1627716_at
Accessions : protein= NP_001036710;, nucleotide= NM_001043245;
Interpro : 0004806 // triglyceride lipase activity // inferred from sequence or structural similarity /// 0004806 // triglyceride l
FlyMine data for FBgn0038067.
Homophila reports that CG11598 is a close match (6e-47) to human gene LIPA (NP_000226), a gene associated with Cholesteryl ester storage disease (3);Wolman disease (3).
VDRC has 2 RNAi stocks for FBgn0038067 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 10 of 4 0.40Down
Head4 ± 10 of 4 0.40Down
Eye0 ± 00 of 4 0.07Down
Thoracicoabdominal ganglion5 ± 20 of 4 0.40Down
Salivary gland21 ± 61 of 4 1.84None
Crop7 ± 10 of 4 0.70None
Midgut10 ± 20 of 4 0.90None
Tubule4 ± 10 of 4 0.40Down
Hindgut3 ± 00 of 4 0.30Down
Heart2 ± 00 of 4 0.25Down
Fat body7 ± 20 of 4 0.65Down
Ovary3 ± 10 of 4 0.30Down
Testis5 ± 02 of 4 0.50Down
Male accessory glands487 ± 364 of 442.50Up
Virgin spermatheca7 ± 20 of 4 0.67None
Mated spermatheca6 ± 10 of 4 0.56None
Adult carcass16 ± 21 of 4 1.40None
Larval CNS6 ± 10 of 4 0.56Down
Larval Salivary gland7 ± 00 of 4 0.67Down
Larval midgut8 ± 10 of 4 0.73None
Larval tubule5 ± 10 of 4 0.50Down
Larval hindgut6 ± 20 of 4 0.59None
Larval fat body9 ± 00 of 4 0.90None
Larval trachea8 ± 20 of 4 0.76None
Larval carcass5 ± 11 of 4 0.48Down
S2 cells (growing)10 ± 00 of 4 0.88None
Whole fly11 ± 11 of 4

Looking for CG11598-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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