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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11622-RA through 18771 annotations produced 1 hits



Rlip (Rlip):

Annotation Number : CG11622
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0026056
Gbrowse : chr3R:16843425-16846475 (+) // 100.0 //
Probeset : 1637284_at
Accessions : protein= NP_650933;, nucleotide= NM_142676;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred f
FlyMine data for FBgn0026056.
BioGrid reports that CG11622 interacts with CG13711 CG13712 CG14112 CG14610 CG15452 CG2849 CG32086 CG3683 CG12985 CG17050 CG2241 CG32171 CG3610 CG6793 CG7172 CG9784 .
VDRC has 2 RNAi stocks for FBgn0026056 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain495 ± 154 of 4 4.90Up
Head145 ± 104 of 4 1.40Up
Eye114 ± 34 of 4 1.14Up
Thoracicoabdominal ganglion498 ± 74 of 4 4.90Up
Salivary gland53 ± 34 of 4 0.53Down
Crop103 ± 24 of 4 1.00None
Midgut68 ± 64 of 4 0.70Down
Tubule278 ± 334 of 4 2.80Up
Hindgut83 ± 34 of 4 0.80Down
Heart54 ± 24 of 4 0.54Down
Fat body29 ± 44 of 4 0.29Down
Ovary213 ± 64 of 4 2.10Up
Testis41 ± 14 of 4 0.40Down
Male accessory glands60 ± 24 of 4 0.60Down
Virgin spermatheca34 ± 24 of 4 0.34Down
Mated spermatheca44 ± 54 of 4 0.44Down
Adult carcass68 ± 44 of 4 0.70Down
Larval CNS209 ± 104 of 4 2.07Up
Larval Salivary gland64 ± 34 of 4 0.63Down
Larval midgut66 ± 94 of 4 0.66Down
Larval tubule146 ± 64 of 4 1.40Up
Larval hindgut74 ± 14 of 4 0.74Down
Larval fat body47 ± 14 of 4 0.50Down
Larval trachea93 ± 194 of 4 0.92None
Larval carcass76 ± 44 of 4 0.76Down
S2 cells (growing)79 ± 24 of 4 0.79Down
Whole fly101 ± 34 of 4

Looking for CG11622-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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