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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11629-RA through 18771 annotations produced 1 hits



(CG11629):

Annotation Number : CG11629
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032965
Gbrowse : chr2L:21896869-21898261 (-) // 100.0 //
Probeset : 1639481_at
Accessions : protein= NP_610125;, nucleotide= NM_136281;
FlyMine data for FBgn0032965.
VDRC has 1 RNAi stocks for FBgn0032965 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.10Down
Head0 ± 00 of 4 0.10Down
Eye0 ± 00 of 4 0.06Down
Thoracicoabdominal ganglion0 ± 00 of 4 0.00Down
Salivary gland8 ± 30 of 4 0.84None
Crop0 ± 00 of 4 0.10Down
Midgut4 ± 10 of 4 0.40None
Tubule2 ± 00 of 4 0.30Down
Hindgut0 ± 00 of 4 0.10Down
Heart1 ± 00 of 4 0.10Down
Fat body2 ± 10 of 4 0.24Down
Ovary0 ± 00 of 4 0.10Down
Testis117 ± 74 of 411.20Up
Male accessory glands3 ± 10 of 4 0.40None
Virgin spermatheca1 ± 00 of 4 0.13Down
Mated spermatheca1 ± 00 of 4 0.18Down
Adult carcass0 ± 00 of 4 0.10Down
Larval CNS1 ± 10 of 4 0.16Down
Larval Salivary gland1 ± 00 of 4 0.16Down
Larval midgut2 ± 10 of 4 0.19Down
Larval tubule5 ± 00 of 4 0.50None
Larval hindgut1 ± 00 of 4 0.18Down
Larval fat body11 ± 41 of 4 1.10None
Larval trachea0 ± 10 of 4 0.09Down
Larval carcass2 ± 00 of 4 0.24Down
S2 cells (growing)3 ± 00 of 4 0.29None
Whole fly10 ± 23 of 4

Looking for CG11629-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime