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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11630-RA through 18771 annotations produced 1 hits



(CG11630):

Annotation Number : CG11630
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032964
Gbrowse : chr2L:21782117-21784013 (-) // 100.0 //
Probeset : 1626800_at
Accessions : protein= NP_610124;, nucleotide= NM_136280;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation
FlyMine data for FBgn0032964.
VDRC has 1 RNAi stocks for FBgn0032964 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 0.20Down
Head4 10 of 4 0.50Down
Eye1 00 of 4 0.18Down
Thoracicoabdominal ganglion7 10 of 4 0.90None
Salivary gland12 40 of 4 1.43None
Crop2 10 of 4 0.30Down
Midgut5 10 of 4 0.70None
Tubule4 00 of 4 0.50Down
Hindgut3 10 of 4 0.40None
Heart0 00 of 4 0.08Down
Fat body4 30 of 4 0.51None
Ovary1 00 of 4 0.10Down
Testis94 34 of 410.60Up
Male accessory glands5 20 of 4 0.60None
Virgin spermatheca2 00 of 4 0.28Down
Mated spermatheca2 10 of 4 0.32Down
Adult carcass12 30 of 4 1.40None
Larval CNS2 10 of 4 0.25Down
Larval Salivary gland9 21 of 4 1.06None
Larval midgut3 10 of 4 0.40Down
Larval tubule5 20 of 4 0.60None
Larval hindgut3 10 of 4 0.37Down
Larval fat body19 82 of 4 2.10None
Larval trachea0 00 of 4 0.08Down
Larval carcass4 10 of 4 0.46Down
S2 cells (growing)2 00 of 4 0.25Down
Whole fly8 10 of 4

Looking for CG11630-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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