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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11635-RA through 18771 annotations produced 1 hits



(CG11635):

Annotation Number : CG11635
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033283
Gbrowse : chr2R:4245630-4246972 (+) // 100.0 //
Probeset : 1624853_at
Accessions : protein= NP_610372;, nucleotide= NM_136528;
FlyMine data for FBgn0033283.
BioGrid reports that CG11635 interacts with CG17272 CG8942 CG12175 CG13138 CG1391 CG1745 CG17666 CG17935 CG18262 CG18444 CG2257 CG4415 CG4463 CG4759 CG5450 CG7697 CG9572 CG9911 .
VDRC has 3 RNAi stocks for FBgn0033283 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain16 10 of 4 0.10Down
Head5 00 of 4 0.00Down
Eye2 00 of 4 0.02Down
Thoracicoabdominal ganglion9 10 of 4 0.10Down
Salivary gland9 20 of 4 0.08Down
Crop7 21 of 4 0.10Down
Midgut9 10 of 4 0.10Down
Tubule4 10 of 4 0.00Down
Hindgut3 10 of 4 0.00Down
Heart3 10 of 4 0.03Down
Fat body11 60 of 4 0.10Down
Ovary2 10 of 4 0.00Down
Testis1196 284 of 410.10Up
Male accessory glands15 20 of 4 0.10Down
Virgin spermatheca5 20 of 4 0.04Down
Mated spermatheca5 10 of 4 0.05Down
Adult carcass10 70 of 4 0.10Down
Larval CNS6 20 of 4 0.06Down
Larval Salivary gland5 10 of 4 0.05Down
Larval midgut20 10 of 4 0.17Down
Larval tubule6 10 of 4 0.10Down
Larval hindgut10 20 of 4 0.08Down
Larval fat body91 332 of 4 0.80None
Larval trachea5 50 of 4 0.05Down
Larval carcass5 30 of 4 0.05Down
S2 cells (growing)2 00 of 4 0.02Down
Whole fly118 34 of 4

Looking for CG11635-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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