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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11637-RA through 18771 annotations produced 1 hits



Ninjurin B (CG11637):

Annotation Number : CG11637
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036822
Gbrowse : chr3L:18885482-18886183 (+) // 100.0 //
Probeset : 1639390_at
Accessions : protein= NP_649068;, nucleotide= NM_140811;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation
Interpro : 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016937 // short-branched-chain-acyl-CoA d
FlyMine data for FBgn0036822.
TRiP has 1 RNAi stocks for FBgn0036822 available for purchase.
VDRC has 5 RNAi stocks for FBgn0036822 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 11 of 4 0.90None
Head12 ± 14 of 4 1.90Up
Eye2 ± 00 of 4 0.33None
Thoracicoabdominal ganglion6 ± 11 of 4 1.00None
Salivary gland14 ± 60 of 4 2.40None
Crop5 ± 00 of 4 0.90None
Midgut7 ± 03 of 4 1.30None
Tubule8 ± 02 of 4 1.40Up
Hindgut8 ± 12 of 4 1.50None
Heart25 ± 04 of 4 4.16Up
Fat body11 ± 14 of 4 1.80None
Ovary3 ± 00 of 4 0.60None
Testis3 ± 00 of 4 0.60None
Male accessory glands14 ± 22 of 4 2.40Up
Virgin spermatheca7 ± 13 of 4 1.15None
Mated spermatheca9 ± 02 of 4 1.48None
Adult carcass14 ± 33 of 4 2.40None
Larval CNS2 ± 10 of 4 0.40None
Larval Salivary gland8 ± 01 of 4 1.42None
Larval midgut7 ± 12 of 4 1.19None
Larval tubule8 ± 22 of 4 1.30None
Larval hindgut4 ± 13 of 4 0.73None
Larval fat body9 ± 22 of 4 1.60None
Larval trachea7 ± 23 of 4 1.29None
Larval carcass7 ± 12 of 4 1.17None
S2 cells (growing)26 ± 04 of 4 4.37Up
Whole fly6 ± 11 of 4

Looking for CG11637-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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