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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11658-RA through 18771 annotations produced 1 hits



(CG11658):

Annotation Number : CG11658
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036196
Gbrowse : chr3L:11693187-11701663 (-) // 100.0 //
Probeset : 1640228_at
Accessions : protein= NP_648498; /// NP_996058; /// NP_996059; /// NP_996060; /// NP_996061;, nucleotide= NM_140241; /// NM_206336; /// NM_206337; /// NM_206338; /// NM_206339;
FlyMine data for FBgn0036196.
BDGP gene expression has embryonic in situ data for CG11658: 18 pix of staining in 5 body parts.
BioGrid reports that CG11658 interacts with CG13423 CG7285 .
TRiP has 1 RNAi stocks for FBgn0036196 available for purchase.
VDRC has 2 RNAi stocks for FBgn0036196 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain183 44 of 4 3.50Up
Head92 74 of 4 1.70Up
Eye83 64 of 4 1.58Up
Thoracicoabdominal ganglion164 134 of 4 3.10Up
Salivary gland142 134 of 4 2.70Up
Crop138 114 of 4 2.60Up
Midgut160 34 of 4 3.00Up
Tubule118 74 of 4 2.20Up
Hindgut146 114 of 4 2.80Up
Heart65 74 of 4 1.24None
Fat body48 114 of 4 0.91None
Ovary37 24 of 4 0.70Down
Testis166 44 of 4 3.10Up
Male accessory glands232 474 of 4 4.40Up
Virgin spermatheca41 24 of 4 0.78Down
Mated spermatheca28 34 of 4 0.54Down
Adult carcass91 54 of 4 1.70Up
Larval CNS45 34 of 4 0.85None
Larval Salivary gland34 24 of 4 0.65Down
Larval midgut100 164 of 4 1.90None
Larval tubule135 24 of 4 2.60Up
Larval hindgut112 104 of 4 2.13Up
Larval fat body47 54 of 4 0.90None
Larval trachea29 114 of 4 0.56Down
Larval carcass40 184 of 4 0.76None
S2 cells (growing)181 74 of 4 3.44Up
Whole fly52 34 of 4

Looking for CG11658-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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