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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG11659-RA through 18771 annotations produced 1 hits


/// /// (CG11407 /// CG11659 /// CG6300):

Annotation Number : CG11659
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038730 /// FBgn0038731
Gbrowse : chrUextra:11635009-11635755 (-) // 43.58 // /// chr3R:15601194-15603002 (-) // 100.0 // /// chr3R:15597115-15598947 (-) // 98.23 //
Probeset : 1634097_s_at
Accessions : protein= NP_650828; /// NP_650829;, nucleotide= NM_142571; /// NM_142572;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0005324 // long-chain fatty acid transporter ac
FlyMine data for FBgn0038730 /// FBgn0038731.
BioGrid reports that CG11659 interacts with CG12470 CG14534 CG2238 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.00Down
Head0 ± 00 of 4 0.00Down
Eye1 ± 00 of 4 0.04Down
Thoracicoabdominal ganglion0 ± 00 of 4 0.00Down
Salivary gland3 ± 10 of 4 0.13Down
Crop0 ± 00 of 4 0.00Down
Midgut0 ± 00 of 4 0.00Down
Tubule2709 ± 3184 of 498.10Up
Hindgut23 ± 20 of 4 0.80None
Heart1 ± 00 of 4 0.07Down
Fat body3 ± 40 of 4 0.12Down
Ovary0 ± 00 of 4 0.00Down
Testis0 ± 00 of 4 0.00Down
Male accessory glands0 ± 00 of 4 0.00Down
Virgin spermatheca1 ± 00 of 4 0.06Down
Mated spermatheca1 ± 00 of 4 0.04Down
Adult carcass1 ± 00 of 4 0.00Down
Larval CNS0 ± 00 of 4 0.02Down
Larval Salivary gland1 ± 00 of 4 0.05Down
Larval midgut0 ± 00 of 4 0.02Down
Larval tubule156 ± 574 of 4 5.70None
Larval hindgut15 ± 52 of 4 0.57None
Larval fat body2 ± 10 of 4 0.10Down
Larval trachea2 ± 20 of 4 0.08Down
Larval carcass0 ± 00 of 4 0.02Down
S2 cells (growing)0 ± 00 of 4 0.01Down
Whole fly27 ± 73 of 4

Looking for CG11659-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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