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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11661-RC through 18771 annotations produced 1 hits



Neural conserved at 73EF (Nc73EF):

Annotation Number : CG11661
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010352
Gbrowse : chr3L:16948604-16961185 (+) // 100.0 //
Probeset : 1632526_s_at
Accessions : protein= NP_001097629; /// NP_730223; /// NP_730224; /// NP_730225; /// NP_788518; /// NP_788519; /// NP_788520;, nucleotide= NM_001104159; /// NM_168701; /// NM_168702; /// NM_168703; /// NM_176340; /// NM_176341; /// NM_176342;
Pathway : 0005875 // microtubule associated complex // inferred from direct assay /// 0009353 // mitochondrial oxoglutarate dehydr
Interpro : "0004591 // oxoglutarate dehydrogenase (succinyl-transferring) activity // inferred from sequence or structural similari
FlyMine data for FBgn0010352.
BioGrid reports that CG11661 interacts with CG13085 CG4328 CG17450 CG32819 CG32820 .
TRiP has 2 RNAi stocks for FBgn0010352 available for purchase.
VDRC has 3 RNAi stocks for FBgn0010352 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain850 264 of 4 0.60Down
Head1460 684 of 4 1.10None
Eye1303 524 of 4 0.95None
Thoracicoabdominal ganglion1020 284 of 4 0.70None
Salivary gland3977 2694 of 4 2.88Up
Crop1741 424 of 4 1.30None
Midgut1110 414 of 4 0.80None
Tubule1458 1124 of 4 1.10None
Hindgut2079 414 of 4 1.50Up
Heart2294 864 of 4 1.66Up
Fat body2624 734 of 4 1.90Up
Ovary343 64 of 4 0.20Down
Testis152 54 of 4 0.10Down
Male accessory glands318 124 of 4 0.20Down
Virgin spermatheca2758 564 of 4 2.00Up
Mated spermatheca2037 1324 of 4 1.48Up
Adult carcass3298 784 of 4 2.40Up
Larval CNS641 204 of 4 0.47Down
Larval Salivary gland938 434 of 4 0.68Down
Larval midgut2141 2064 of 4 1.55Up
Larval tubule2053 744 of 4 1.50Up
Larval hindgut3134 674 of 4 2.27Up
Larval fat body577 384 of 4 0.40Down
Larval trachea842 824 of 4 0.61Down
Larval carcass2701 2274 of 4 1.96Up
S2 cells (growing)852 304 of 4 0.62Down
Whole fly1379 1334 of 4

Looking for CG11661-RC. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime