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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11665-RA through 18771 annotations produced 1 hits



(CG11665):

Annotation Number : CG11665
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033028
Gbrowse : chr2R:1529159-1540288 (-) // 100.0 //
Probeset : 1629871_at
Accessions : protein= NP_610174;, nucleotide= NM_136330;
Interpro : 0008028 // monocarboxylic acid transmembrane transporter activity // inferred from sequence or structural similarity
FlyMine data for FBgn0033028.
BDGP gene expression has embryonic in situ data for CG11665: 4 pix of staining in 1 body parts.
Homophila reports that CG11665 is a close match (2e-17) to human gene DXS128;SLC16A2;XPCT (NP_006508), a gene associated with Allan-Herndon-Dudley syndrome, 300523 (3).
VDRC has 1 RNAi stocks for FBgn0033028 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain454 ± 34 of 4 2.10Up
Head253 ± 34 of 4 1.20Up
Eye212 ± 104 of 4 0.97None
Thoracicoabdominal ganglion412 ± 124 of 4 1.90Up
Salivary gland201 ± 94 of 4 0.92None
Crop239 ± 74 of 4 1.10None
Midgut211 ± 54 of 4 1.00None
Tubule232 ± 54 of 4 1.10Up
Hindgut206 ± 44 of 4 0.90None
Heart334 ± 64 of 4 1.52Up
Fat body286 ± 214 of 4 1.30Up
Ovary381 ± 74 of 4 1.70Up
Testis250 ± 134 of 4 1.10None
Male accessory glands184 ± 74 of 4 0.80Down
Virgin spermatheca278 ± 134 of 4 1.27Up
Mated spermatheca297 ± 254 of 4 1.35None
Adult carcass188 ± 84 of 4 0.90Down
Larval CNS269 ± 234 of 4 1.22Up
Larval Salivary gland209 ± 64 of 4 0.95None
Larval midgut213 ± 154 of 4 0.97None
Larval tubule402 ± 64 of 4 1.80Up
Larval hindgut192 ± 34 of 4 0.87Down
Larval fat body360 ± 164 of 4 1.60Up
Larval trachea194 ± 84 of 4 0.88Down
Larval carcass226 ± 174 of 4 1.03None
S2 cells (growing)459 ± 84 of 4 2.09Up
Whole fly220 ± 04 of 4

Looking for CG11665-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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