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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG11668-RA through 18771 annotations produced 1 hits


Annotation Number : CG11668
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038113
Gbrowse : chr3R:8864134-8865906 (+) // 100.0 //
Probeset : 1623522_at
Accessions : protein= NP_650254;, nucleotide= NM_141997;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0038113.
BDGP gene expression has embryonic in situ data for CG11668: 8 pix of staining in 1 body parts.
Homophila reports that CG11668 is a close match (4e-11) to human gene IF (NP_000195), a gene associated with C3b inactivator deficiency (3).
VDRC has 2 RNAi stocks for FBgn0038113 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain62 54 of 4 5.10Up
Head59 14 of 4 4.90Up
Eye22 34 of 4 1.83None
Thoracicoabdominal ganglion38 54 of 4 3.20Up
Salivary gland11 30 of 4 0.94None
Crop13 23 of 4 1.10None
Midgut17 42 of 4 1.40None
Tubule52 24 of 4 4.30Up
Hindgut9 10 of 4 0.80None
Heart6 21 of 4 0.55None
Fat body13 12 of 4 1.08None
Ovary4 10 of 4 0.30Down
Testis3 10 of 4 0.30Down
Male accessory glands10 11 of 4 0.80None
Virgin spermatheca16 21 of 4 1.32None
Mated spermatheca10 10 of 4 0.84None
Adult carcass25 33 of 4 2.10Up
Larval CNS13 24 of 4 1.13None
Larval Salivary gland11 21 of 4 0.95None
Larval midgut12 20 of 4 1.00None
Larval tubule24 14 of 4 2.00Up
Larval hindgut20 24 of 4 1.67Up
Larval fat body24 34 of 4 2.00Up
Larval trachea10 23 of 4 0.89None
Larval carcass95 184 of 4 7.82Up
S2 cells (growing)12 14 of 4 0.99None
Whole fly12 13 of 4

Looking for CG11668-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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