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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11669-RA through 18771 annotations produced 1 hits



/// (CG11669 /// DsecCG11669):

Annotation Number : CG11669
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033296
Gbrowse : chr2R:4357053-4359802 (-) // 100.0 //
Probeset : 1639262_at
Accessions : protein= NP_610383;, nucleotide= NM_136539;
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0004558 // alpha-glucosidase activity // infer
FlyMine data for FBgn0033296.
Homophila reports that CG11669 is a close match (3e-96) to human gene ATR1;D2H;NBAT;SLC3A1 (NP_000332), a gene associated with Cystinuria, 220100 (3);Homozygous 2p16 deletion syndrome, 606407 (3).
VDRC has 2 RNAi stocks for FBgn0033296 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 10 of 4 0.00Down
Head2 ± 10 of 4 0.00Down
Eye3 ± 11 of 4 0.01Down
Thoracicoabdominal ganglion3 ± 00 of 4 0.00Down
Salivary gland9 ± 20 of 4 0.03Down
Crop5 ± 11 of 4 0.00Down
Midgut4672 ± 964 of 413.50Up
Tubule3 ± 00 of 4 0.00Down
Hindgut4 ± 00 of 4 0.00Down
Heart2 ± 10 of 4 0.01Down
Fat body5 ± 20 of 4 0.02Down
Ovary2 ± 10 of 4 0.00Down
Testis13 ± 41 of 4 0.00Down
Male accessory glands4 ± 10 of 4 0.00Down
Virgin spermatheca4 ± 10 of 4 0.01Down
Mated spermatheca4 ± 10 of 4 0.01Down
Adult carcass6 ± 10 of 4 0.00Down
Larval CNS4 ± 11 of 4 0.01Down
Larval Salivary gland5 ± 20 of 4 0.02Down
Larval midgut47 ± 152 of 4 0.14Down
Larval tubule4 ± 10 of 4 0.00Down
Larval hindgut2 ± 00 of 4 0.01Down
Larval fat body16 ± 22 of 4 0.00Down
Larval trachea2 ± 10 of 4 0.01Down
Larval carcass6 ± 11 of 4 0.02Down
S2 cells (growing)4 ± 10 of 4 0.01Down
Whole fly347 ± 334 of 4

Looking for CG11669-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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