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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11670-RA through 18771 annotations produced 1 hits



(CG11670):

Annotation Number : CG11670
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038114
Gbrowse : chr3R:8867789-8870251 (+) // 100.0 //
Probeset : 1626623_at
Accessions : protein= NP_001097767; /// NP_001097768;, nucleotide= NM_001104297; /// NM_001104298;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0038114.
BDGP gene expression has embryonic in situ data for CG11670: 20 pix of staining in 3 body parts.
Homophila reports that CG11670 is a close match (7e-11) to human gene DFNB10;DFNB8;ECHOS1;TMPRSS3 (NP_115780), a gene associated with Deafness, autosomal recessive 10, congenital, 605316 (3);Deafness, autosomal recessive 8, childhood onset, 601072 (3).
VDRC has 2 RNAi stocks for FBgn0038114 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 11 of 4 0.70None
Head7 11 of 4 1.00None
Eye6 12 of 4 0.83None
Thoracicoabdominal ganglion6 10 of 4 0.90None
Salivary gland27 34 of 4 3.72Up
Crop12 13 of 4 1.70Up
Midgut9 10 of 4 1.30None
Tubule13 12 of 4 1.80Up
Hindgut21 14 of 4 2.90Up
Heart7 13 of 4 0.94None
Fat body15 34 of 4 2.00Up
Ovary3 00 of 4 0.50Down
Testis5 01 of 4 0.70Down
Male accessory glands16 30 of 4 2.30None
Virgin spermatheca24 04 of 4 3.23Up
Mated spermatheca26 34 of 4 3.49Up
Adult carcass13 32 of 4 1.90None
Larval CNS73 114 of 4 9.82Up
Larval Salivary gland11 30 of 4 1.57None
Larval midgut6 00 of 4 0.80None
Larval tubule10 20 of 4 1.40None
Larval hindgut11 13 of 4 1.56Up
Larval fat body10 30 of 4 1.40None
Larval trachea15 81 of 4 2.01None
Larval carcass384 334 of 451.27Up
S2 cells (growing)6 01 of 4 0.82None
Whole fly7 00 of 4

Looking for CG11670-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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