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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG11672-RA through 18771 annotations produced 1 hits


Annotation Number : CG11672
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037563
Gbrowse : chr3R:4115127-4116287 (-) // 100.0 //
Probeset : 1630159_at
Accessions : protein= NP_649779;, nucleotide= NM_141522;
FlyMine data for FBgn0037563.
BioGrid reports that CG11672 interacts with CG13142 CG14941 CG15224 CG1810 CG1851 CG18642 CG18812 CG2033 CG32230 CG3922 CG3936 CG3992 CG5057 CG5867 CG6141 CG6159 CG6238 CG6680 CG7007 CG7851 CG9291 CG9412 .
VDRC has 1 RNAi stocks for FBgn0037563 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.00Down
Head19 102 of 4 0.30Down
Eye3 10 of 4 0.06Down
Thoracicoabdominal ganglion1 00 of 4 0.00Down
Salivary gland3 20 of 4 0.05Down
Crop21 201 of 4 0.30None
Midgut754 74 of 410.90Up
Tubule1 00 of 4 0.00Down
Hindgut1 00 of 4 0.00Down
Heart1 00 of 4 0.02Down
Fat body1 00 of 4 0.01Down
Ovary0 00 of 4 0.00Down
Testis2 00 of 4 0.00Down
Male accessory glands1 00 of 4 0.00Down
Virgin spermatheca1 00 of 4 0.01Down
Mated spermatheca0 00 of 4 0.01Down
Adult carcass5 20 of 4 0.10Down
Larval CNS1 10 of 4 0.03Down
Larval Salivary gland2 00 of 4 0.03Down
Larval midgut553 254 of 4 7.96Up
Larval tubule1 10 of 4 0.00Down
Larval hindgut0 00 of 4 0.01Down
Larval fat body1 00 of 4 0.00Down
Larval trachea0 00 of 4 0.01Down
Larval carcass2 00 of 4 0.03Down
S2 cells (growing)0 00 of 4 0.01Down
Whole fly69 94 of 4

Looking for CG11672-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime