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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG1168-RA through 18771 annotations produced 1 hits

7B2 (7B2):

Annotation Number : CG1168
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0041707
Gbrowse : chr3R:1202475-1203697 (+) // 100.0 //
Probeset : 1636249_at
Accessions : protein= NP_001014608; /// NP_620471;, nucleotide= NM_001014608; /// NM_138986;
Pathway : 0030141 // stored secretory granule // inferred from electronic annotation
Interpro : 0016504 // peptidase activator activity // inferred from direct assay
FlyMine data for FBgn0041707.
BioGrid reports that CG1168 interacts with CG15109 CG13379 CG2371 CG33017 CG4303 CG4755 CG6147 CG7021 CG8725 CG9102 CG31094 .
TRiP has 1 RNAi stocks for FBgn0041707 available for purchase.
VDRC has 2 RNAi stocks for FBgn0041707 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2459 1004 of 419.10Up
Head1637 484 of 412.70Up
Eye2233 644 of 417.38Up
Thoracicoabdominal ganglion2391 604 of 418.60Up
Salivary gland2 00 of 4 0.02Down
Crop0 00 of 4 0.00Down
Midgut110 74 of 4 0.90None
Tubule3 00 of 4 0.00Down
Hindgut25 32 of 4 0.20Down
Heart21 14 of 4 0.17Down
Fat body7 50 of 4 0.06Down
Ovary0 00 of 4 0.00Down
Testis14 12 of 4 0.10Down
Male accessory glands1 00 of 4 0.00Down
Virgin spermatheca1 00 of 4 0.01Down
Mated spermatheca1 00 of 4 0.01Down
Adult carcass50 91 of 4 0.40Down
Larval CNS984 504 of 4 7.65Up
Larval Salivary gland10 30 of 4 0.08Down
Larval midgut99 44 of 4 0.77Down
Larval tubule3 20 of 4 0.00Down
Larval hindgut54 64 of 4 0.43Down
Larval fat body88 144 of 4 0.70None
Larval trachea86 614 of 4 0.67None
Larval carcass19 10 of 4 0.15Down
S2 cells (growing)1 00 of 4 0.01Down
Whole fly128 84 of 4

Looking for CG1168-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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