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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG1169-RA through 18771 annotations produced 1 hits

Osiris (Osi18):

Annotation Number : CG1169
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037428
Gbrowse : chr3R:2155971-2157531 (+) // 99.61 //
Probeset : 1641045_at
Accessions : protein= NP_649639;, nucleotide= NM_141382;
FlyMine data for FBgn0037428.
BDGP gene expression has embryonic in situ data for CG1169: 12 pix of staining in 2 body parts.
VDRC has 2 RNAi stocks for FBgn0037428 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 0.50None
Head1 00 of 4 0.30None
Eye4 10 of 4 0.57None
Thoracicoabdominal ganglion1 00 of 4 0.20None
Salivary gland9 20 of 4 1.32None
Crop1 00 of 4 0.20None
Midgut7 40 of 4 1.00None
Tubule1 00 of 4 0.20Down
Hindgut1 00 of 4 0.20None
Heart3 00 of 4 0.51None
Fat body4 40 of 4 0.63None
Ovary1 00 of 4 0.20None
Testis1 00 of 4 0.20None
Male accessory glands2 00 of 4 0.30None
Virgin spermatheca1 00 of 4 0.23None
Mated spermatheca1 00 of 4 0.13None
Adult carcass3 00 of 4 0.50None
Larval CNS0 00 of 4 0.11None
Larval Salivary gland8 10 of 4 1.17None
Larval midgut4 10 of 4 0.62None
Larval tubule1 00 of 4 0.20None
Larval hindgut1 00 of 4 0.17None
Larval fat body3 10 of 4 0.40None
Larval trachea3 00 of 4 0.45None
Larval carcass1 00 of 4 0.22None
S2 cells (growing)2 10 of 4 0.34None
Whole fly7 30 of 4

Looking for CG1169-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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