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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11693-RA through 18771 annotations produced 1 hits



(CG11693):

Annotation Number : CG11693
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037570
Gbrowse : chr3R:4134699-4135656 (-) // 100.0 //
Probeset : 1627260_at
Accessions : protein= NP_649785;, nucleotide= NM_141528;
FlyMine data for FBgn0037570.
BioGrid reports that CG11693 interacts with CG12985 CG8863 .
VDRC has 2 RNAi stocks for FBgn0037570 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain10 ± 30 of 4 2.10None
Head11 ± 00 of 4 2.40Up
Eye5 ± 10 of 4 1.05None
Thoracicoabdominal ganglion10 ± 30 of 4 2.20None
Salivary gland20 ± 80 of 4 4.17None
Crop10 ± 00 of 4 2.20Up
Midgut20 ± 62 of 4 4.30None
Tubule6 ± 10 of 4 1.30None
Hindgut16 ± 10 of 4 3.30Up
Heart9 ± 00 of 4 2.02None
Fat body20 ± 51 of 4 4.12Up
Ovary3 ± 00 of 4 0.70None
Testis6 ± 20 of 4 1.40None
Male accessory glands6 ± 10 of 4 1.30None
Virgin spermatheca12 ± 10 of 4 2.61Up
Mated spermatheca11 ± 20 of 4 2.38None
Adult carcass26 ± 21 of 4 5.50Up
Larval CNS6 ± 20 of 4 1.33None
Larval Salivary gland10 ± 20 of 4 2.18None
Larval midgut18 ± 13 of 4 3.78Up
Larval tubule12 ± 40 of 4 2.60None
Larval hindgut10 ± 11 of 4 2.12Up
Larval fat body10 ± 20 of 4 2.10None
Larval trachea5 ± 30 of 4 1.13None
Larval carcass17 ± 40 of 4 3.51None
S2 cells (growing)20 ± 10 of 4 4.18Up
Whole fly4 ± 10 of 4

Looking for CG11693-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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