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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11695-RA through 18771 annotations produced 1 hits



(CG11695):

Annotation Number : CG11695
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030316
Gbrowse : chrX:11470915-11472849 (+) // 100.0 //
Probeset : 1636732_at
Accessions : protein= NP_001162725; /// NP_572732;, nucleotide= NM_001169254; /// NM_132504;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annot
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from p
FlyMine data for FBgn0030316.
Homophila reports that CG11695 is a close match (7e-11) to human gene AITD3;ZFAT1;ZNF406 (NP_001025110), a gene associated with {Autoimmune thyroid disease, susceptibility to, 3}, 608175 (3).
BioGrid reports that CG11695 interacts with CG4766 CG4755 CG5680 CG33133 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain84 ± 14 of 4 2.30Up
Head42 ± 14 of 4 1.20None
Eye113 ± 64 of 4 3.12Up
Thoracicoabdominal ganglion73 ± 44 of 4 2.00Up
Salivary gland40 ± 24 of 4 1.11None
Crop40 ± 24 of 4 1.10None
Midgut17 ± 11 of 4 0.50Down
Tubule17 ± 22 of 4 0.50Down
Hindgut36 ± 24 of 4 1.00None
Heart23 ± 14 of 4 0.64Down
Fat body21 ± 34 of 4 0.58Down
Ovary62 ± 34 of 4 1.70Up
Testis20 ± 14 of 4 0.60Down
Male accessory glands86 ± 74 of 4 2.40Up
Virgin spermatheca18 ± 22 of 4 0.50Down
Mated spermatheca19 ± 32 of 4 0.53Down
Adult carcass31 ± 44 of 4 0.90None
Larval CNS49 ± 64 of 4 1.35Up
Larval Salivary gland40 ± 14 of 4 1.12None
Larval midgut21 ± 30 of 4 0.59Down
Larval tubule27 ± 21 of 4 0.70Down
Larval hindgut25 ± 34 of 4 0.70Down
Larval fat body29 ± 21 of 4 0.80None
Larval trachea52 ± 34 of 4 1.45Up
Larval carcass22 ± 10 of 4 0.61Down
S2 cells (growing)41 ± 54 of 4 1.13None
Whole fly36 ± 14 of 4

Looking for CG11695-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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