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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11696-RA through 18771 annotations produced 1 hits



(CG11696):

Annotation Number : CG11696
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030314
Gbrowse : chrX:11467833-11470183 (+) // 100.0 //
Probeset : 1631288_at
Accessions : protein= NP_572731;, nucleotide= NM_132503;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annot
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from elect
FlyMine data for FBgn0030314.
BDGP gene expression has embryonic in situ data for CG11696: 56 pix of staining in 30 body parts.
Homophila reports that CG11696 is a close match (2e-13) to human gene GFI1;ZNF163 (NP_005254), a gene associated with Neutropenia, nonimmune chronic idiopathic, of adults, 607847 (3);Neutropenia, severe congenital, 202700 (3).
BioGrid reports that CG11696 interacts with CG14667 CG5643 CG7386 CG13405 CG4071 CG4832 .
TRiP has 1 RNAi stocks for FBgn0030314 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain82 24 of 4 0.80Down
Head41 44 of 4 0.40Down
Eye36 24 of 4 0.35Down
Thoracicoabdominal ganglion68 44 of 4 0.70Down
Salivary gland49 94 of 4 0.47Down
Crop48 04 of 4 0.50Down
Midgut31 44 of 4 0.30Down
Tubule37 24 of 4 0.40Down
Hindgut44 14 of 4 0.40Down
Heart23 14 of 4 0.23Down
Fat body31 13 of 4 0.30Down
Ovary182 54 of 4 1.70Up
Testis39 14 of 4 0.40Down
Male accessory glands60 44 of 4 0.60Down
Virgin spermatheca34 24 of 4 0.32Down
Mated spermatheca30 14 of 4 0.29Down
Adult carcass42 10 of 4 0.40Down
Larval CNS115 34 of 4 1.10None
Larval Salivary gland38 24 of 4 0.37Down
Larval midgut30 34 of 4 0.29Down
Larval tubule45 14 of 4 0.40Down
Larval hindgut52 44 of 4 0.50Down
Larval fat body35 34 of 4 0.30Down
Larval trachea44 74 of 4 0.42Down
Larval carcass41 44 of 4 0.40Down
S2 cells (growing)75 34 of 4 0.71Down
Whole fly105 34 of 4

Looking for CG11696-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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