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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG11698-RA through 18771 annotations produced 1 hits


Annotation Number : CG11698
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037572
Gbrowse : chr3R:4137944-4138819 (+) // 100.0 //
Probeset : 1624827_at
Accessions : protein= NP_649787;, nucleotide= NM_141530;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0037572.
BDGP gene expression has embryonic in situ data for CG11698: 4 pix of staining in 1 body parts.
BioGrid reports that CG11698 interacts with CG12985 CG8328 CG14145 CG4617 .
VDRC has 2 RNAi stocks for FBgn0037572 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.20None
Head1 00 of 4 0.30None
Eye0 00 of 4 0.17Down
Thoracicoabdominal ganglion0 00 of 4 0.20Down
Salivary gland2 00 of 4 0.65None
Crop1 00 of 4 0.30None
Midgut0 00 of 4 0.20Down
Tubule1 00 of 4 0.30Down
Hindgut0 00 of 4 0.30None
Heart0 00 of 4 0.20Down
Fat body0 00 of 4 0.24None
Ovary0 00 of 4 0.20Down
Testis104 44 of 430.20Up
Male accessory glands2 00 of 4 0.80None
Virgin spermatheca1 00 of 4 0.27None
Mated spermatheca1 00 of 4 0.27None
Adult carcass1 00 of 4 0.40None
Larval CNS0 00 of 4 0.17Down
Larval Salivary gland1 00 of 4 0.31None
Larval midgut1 00 of 4 0.29None
Larval tubule0 00 of 4 0.20None
Larval hindgut0 00 of 4 0.17Down
Larval fat body11 71 of 4 3.30None
Larval trachea0 00 of 4 0.26None
Larval carcass0 00 of 4 0.24None
S2 cells (growing)0 00 of 4 0.16Down
Whole fly3 00 of 4

Looking for CG11698-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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