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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11715-RA through 18771 annotations produced 1 hits



Cyp4g15 (Cyp4g15):

Annotation Number : CG11715
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030304
Gbrowse : chrX:11371113-11377138 (+) // 100.0 //
Probeset : 1635727_a_at
Accessions : protein= NP_572721; /// NP_727531;, nucleotide= NM_132493; /// NM_167287;
Pathway : 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane //
Interpro : 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred fro
FlyMine data for FBgn0030304.
BDGP gene expression has embryonic in situ data for Cyp4g15: 12 pix of staining in 3 body parts.
Homophila reports that CG11715 is a close match (9e-11) to human gene CYP5;GHOSAL;TBXAS1 (NP_112246), a gene associated with Ghosal syndrome, 231095 (3);Thromboxane synthase deficiency (2).
TRiP has 1 RNAi stocks for FBgn0030304 available for purchase.
VDRC has 2 RNAi stocks for FBgn0030304 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain733 ± 164 of 415.90Up
Head556 ± 184 of 412.00Up
Eye686 ± 104 of 414.88Up
Thoracicoabdominal ganglion1452 ± 384 of 431.50Up
Salivary gland33 ± 43 of 4 0.73None
Crop27 ± 34 of 4 0.60Down
Midgut33 ± 14 of 4 0.70Down
Tubule38 ± 14 of 4 0.80Down
Hindgut85 ± 24 of 4 1.90Up
Heart45 ± 24 of 4 0.99None
Fat body72 ± 124 of 4 1.57Up
Ovary7 ± 02 of 4 0.20Down
Testis13 ± 04 of 4 0.30Down
Male accessory glands98 ± 34 of 4 2.10Up
Virgin spermatheca26 ± 54 of 4 0.56Down
Mated spermatheca30 ± 24 of 4 0.66Down
Adult carcass112 ± 84 of 4 2.40Up
Larval CNS559 ± 494 of 412.11Up
Larval Salivary gland3 ± 10 of 4 0.07Down
Larval midgut5 ± 11 of 4 0.12Down
Larval tubule4 ± 02 of 4 0.10Down
Larval hindgut8 ± 21 of 4 0.19Down
Larval fat body5 ± 20 of 4 0.10Down
Larval trachea14 ± 221 of 4 0.30None
Larval carcass5 ± 10 of 4 0.13Down
S2 cells (growing)2 ± 11 of 4 0.06Down
Whole fly46 ± 34 of 4

Looking for CG11715-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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