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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11720-RA through 18771 annotations produced 1 hits



salivary gland glue protein 3 (Sgs3):

Annotation Number : CG11720
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003373
Gbrowse : chr3L:11505320-11506503 (+) // 100.0 //
Probeset : 1624308_at
Accessions : protein= NP_524024;, nucleotide= NM_079300;
Pathway : 0005576 // extracellular region // non-traceable author statement /// 0005576 // extracellular region // traceable autho
Interpro : 0005198 // structural molecule activity // traceable author statement
FlyMine data for FBgn0003373.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.70None
Head1 ± 00 of 4 1.30None
Eye1 ± 00 of 4 0.98None
Thoracicoabdominal ganglion1 ± 00 of 4 1.20None
Salivary gland2 ± 00 of 4 1.86None
Crop1 ± 00 of 4 1.10None
Midgut2 ± 00 of 4 1.80None
Tubule1 ± 00 of 4 1.00None
Hindgut1 ± 00 of 4 1.40None
Heart1 ± 00 of 4 1.41None
Fat body13 ± 120 of 410.59None
Ovary0 ± 00 of 4 0.50Down
Testis1 ± 00 of 4 0.80None
Male accessory glands1 ± 00 of 4 1.50None
Virgin spermatheca3 ± 10 of 4 3.00None
Mated spermatheca1 ± 00 of 4 1.12None
Adult carcass2 ± 00 of 4 1.90None
Larval CNS1 ± 00 of 4 1.27None
Larval Salivary gland10308 ± 6794 of 48414.67Up
Larval midgut23 ± 201 of 419.51None
Larval tubule1 ± 00 of 4 1.40None
Larval hindgut6 ± 30 of 4 5.08None
Larval fat body1483 ± 5283 of 41211.20None
Larval trachea6 ± 40 of 4 5.37None
Larval carcass11 ± 60 of 4 9.65None
S2 cells (growing)1 ± 00 of 4 0.84None
Whole fly1 ± 00 of 4

Looking for CG11720-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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