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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11723-RA through 18771 annotations produced 1 hits



(CG11723):

Annotation Number : CG11723
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031391
Gbrowse : chr2L:2145496-2147287 (-) // 99.65 //
Probeset : 1627934_at
Accessions : protein= NP_608647;, nucleotide= NM_134803;
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical i
FlyMine data for FBgn0031391.
BDGP gene expression has embryonic in situ data for CG11723: 32 pix of staining in 5 body parts.
BioGrid reports that CG11723 interacts with CG2727 CG13030 CG5913 CG8361 .
TRiP has 2 RNAi stocks for FBgn0031391 available for purchase.
VDRC has 1 RNAi stocks for FBgn0031391 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain165 34 of 4 1.10Up
Head144 64 of 4 0.90None
Eye200 54 of 4 1.31Up
Thoracicoabdominal ganglion158 34 of 4 1.00None
Salivary gland137 84 of 4 0.89None
Crop139 74 of 4 0.90None
Midgut106 34 of 4 0.70Down
Tubule160 94 of 4 1.00None
Hindgut93 44 of 4 0.60Down
Heart101 24 of 4 0.66Down
Fat body119 44 of 4 0.78Down
Ovary353 54 of 4 2.30Up
Testis121 34 of 4 0.80Down
Male accessory glands168 54 of 4 1.10None
Virgin spermatheca141 24 of 4 0.92Down
Mated spermatheca163 24 of 4 1.06None
Adult carcass112 44 of 4 0.70Down
Larval CNS243 134 of 4 1.59Up
Larval Salivary gland228 64 of 4 1.49Up
Larval midgut98 24 of 4 0.64Down
Larval tubule139 44 of 4 0.90Down
Larval hindgut95 44 of 4 0.62Down
Larval fat body181 84 of 4 1.20Up
Larval trachea134 104 of 4 0.88Down
Larval carcass125 24 of 4 0.82Down
S2 cells (growing)242 44 of 4 1.58Up
Whole fly153 34 of 4

Looking for CG11723-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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