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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG11756-RA through 18771 annotations produced 1 hits


(CG11756):

Annotation Number : CG11756
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030290
Gbrowse : chrX:11242152-11242899 (+) // 100.0 //
Probeset : 1629444_at
Accessions : protein= NP_572708;, nucleotide= NM_132480;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0030290.
BDGP gene expression has embryonic in situ data for CG11756: 6 pix of staining in 1 body parts.
BioGrid reports that CG11756 interacts with CG3658 CG6459 CG4696 .
VDRC has 3 RNAi stocks for FBgn0030290 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.10Down
Head3 ± 10 of 4 0.10Down
Eye3 ± 00 of 4 0.11Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.10Down
Salivary gland7 ± 30 of 4 0.25Down
Crop1 ± 00 of 4 0.10Down
Midgut2 ± 00 of 4 0.10Down
Tubule2 ± 00 of 4 0.10Down
Hindgut3 ± 00 of 4 0.10Down
Heart3 ± 10 of 4 0.11Down
Fat body5 ± 80 of 4 0.20Down
Ovary3 ± 10 of 4 0.10Down
Testis288 ± 154 of 4 9.80Up
Male accessory glands7 ± 10 of 4 0.20Down
Virgin spermatheca2 ± 10 of 4 0.08Down
Mated spermatheca1 ± 00 of 4 0.05Down
Adult carcass3 ± 10 of 4 0.10Down
Larval CNS9 ± 30 of 4 0.32Down
Larval Salivary gland7 ± 10 of 4 0.26Down
Larval midgut5 ± 20 of 4 0.19Down
Larval tubule4 ± 00 of 4 0.10Down
Larval hindgut3 ± 10 of 4 0.11Down
Larval fat body26 ± 131 of 4 0.90None
Larval trachea6 ± 41 of 4 0.21Down
Larval carcass2 ± 00 of 4 0.09Down
S2 cells (growing)2 ± 00 of 4 0.08Down
Whole fly29 ± 24 of 4

Looking for CG11756-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime