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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11761-RA through 18771 annotations produced 1 hits



translin (trsn):

Annotation Number : CG11761
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033528
Gbrowse : chr2R:6366506-6367612 (-) // 100.0 //
Probeset : 1632396_at
Accessions : protein= NP_610591;, nucleotide= NM_136747;
Pathway : 0005634 // nucleus // inferred from sequence or structural similarity
Interpro : 0003677 // DNA binding // inferred from sequence or structural similarity /// 0004521 // endoribonuclease activity // in
FlyMine data for FBgn0033528.
BDGP gene expression has embryonic in situ data for CG11761: 4 pix of staining in 1 body parts.
BioGrid reports that CG11761 interacts with CG11761 CG11820 CG1435 CG17599 CG2774 CG5012 CG5063 CG7945 CG8965 CG9740 CG12558 CG3937 CG4254 CG6046 CG6856 CG31359 CG18743 CG31449 CG5834 CG6489 CG31366 .
VDRC has 3 RNAi stocks for FBgn0033528 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain157 ± 64 of 4 0.90None
Head113 ± 24 of 4 0.70Down
Eye162 ± 74 of 4 0.97None
Thoracicoabdominal ganglion196 ± 64 of 4 1.20Up
Salivary gland116 ± 124 of 4 0.70Down
Crop123 ± 94 of 4 0.70Down
Midgut118 ± 34 of 4 0.70Down
Tubule74 ± 14 of 4 0.40Down
Hindgut114 ± 44 of 4 0.70Down
Heart100 ± 34 of 4 0.60Down
Fat body56 ± 64 of 4 0.34Down
Ovary320 ± 64 of 4 1.90Up
Testis130 ± 24 of 4 0.80Down
Male accessory glands183 ± 134 of 4 1.10None
Virgin spermatheca161 ± 44 of 4 0.96None
Mated spermatheca170 ± 64 of 4 1.02None
Adult carcass77 ± 74 of 4 0.50Down
Larval CNS585 ± 374 of 4 3.51Up
Larval Salivary gland365 ± 244 of 4 2.18Up
Larval midgut104 ± 74 of 4 0.62Down
Larval tubule170 ± 54 of 4 1.00None
Larval hindgut136 ± 24 of 4 0.82Down
Larval fat body193 ± 114 of 4 1.20None
Larval trachea339 ± 344 of 4 2.03Up
Larval carcass168 ± 34 of 4 1.01None
S2 cells (growing)368 ± 54 of 4 2.20Up
Whole fly167 ± 44 of 4

Looking for CG11761-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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