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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11777-RA through 18771 annotations produced 1 hits



(CG11777):

Annotation Number : CG11777
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033527
Gbrowse : chr2R:6356123-6357155 (+) // 100.0 //
Probeset : 1635506_at
Accessions : protein= NP_724939;, nucleotide= NM_165776;
Interpro : 0003755 // peptidyl-prolyl cis-trans isomerase activity // inferred from sequence or structural similarity /// 0003755 /
FlyMine data for FBgn0033527.
BDGP gene expression has embryonic in situ data for CG11777: 4 pix of staining in 1 body parts.
BioGrid reports that CG11777 interacts with CG9163 .
VDRC has 1 RNAi stocks for FBgn0033527 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain67 ± 14 of 4 0.60Down
Head64 ± 54 of 4 0.60Down
Eye63 ± 24 of 4 0.56Down
Thoracicoabdominal ganglion83 ± 14 of 4 0.70Down
Salivary gland89 ± 84 of 4 0.79None
Crop103 ± 24 of 4 0.90None
Midgut72 ± 24 of 4 0.60Down
Tubule53 ± 24 of 4 0.50Down
Hindgut73 ± 34 of 4 0.60Down
Heart65 ± 24 of 4 0.58Down
Fat body40 ± 74 of 4 0.35Down
Ovary223 ± 14 of 4 2.00Up
Testis96 ± 74 of 4 0.80None
Male accessory glands120 ± 84 of 4 1.10None
Virgin spermatheca40 ± 24 of 4 0.36Down
Mated spermatheca59 ± 34 of 4 0.52Down
Adult carcass51 ± 14 of 4 0.50Down
Larval CNS231 ± 244 of 4 2.05Up
Larval Salivary gland138 ± 44 of 4 1.22Up
Larval midgut51 ± 14 of 4 0.45Down
Larval tubule85 ± 54 of 4 0.80Down
Larval hindgut75 ± 14 of 4 0.66Down
Larval fat body62 ± 44 of 4 0.50Down
Larval trachea124 ± 144 of 4 1.10None
Larval carcass79 ± 24 of 4 0.71Down
S2 cells (growing)114 ± 34 of 4 1.02None
Whole fly113 ± 44 of 4

Looking for CG11777-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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